Chemical and Environmental Engineering Department Open Access Policy Deposits

Rodríguez-Borbón, José M; Wang, Xian; Diéguez, Adrián P; Ibrahim, Khaled Z; Wong, Bryan M: VAN-DAMME: GPU-accelerated and symmetry-assisted quantum optimal control of multi-qubit systems, 2025

Choi, Min; Okyay, Mahmut Sait; Dieguez, Adrian Perez; Del Ben, Mauro; Ibrahim, Khaled Z; Wong, Bryan M: QRCODE: Massively parallelized real-time time-dependent density functional theory for periodic systems, 2024

Hu, Rongbin; Teng, Xiaoxuan; Li, Yanran: Unleashing plant synthetic capacity: navigating regulatory mechanisms for enhanced bioproduction and secondary metabolite discovery, 2024

Rodríguez-Borbón, José M; Wang, Xian; Diéguez, Adrián P; Ibrahim, Khaled Z; Wong, Bryan M: TRAVOLTA: GPU acceleration and algorithmic improvements for constructing quantum optimal control fields in photo-excited systems, 2024

Tafrishi, Aida; Trivedi, Varun; Xing, Zenan; Li, Mengwan; Mewalal, Ritesh; Cutler, Sean R et al.: Functional genomic screening in Komagataella phaffii enabled by high-activity CRISPR-Cas9 library, 2024

Trivedi, Varun; Mohseni, Amirsadra; Lonardi, Stefano; Wheeldon, Ian: Balanced Training Sets Improve Deep Learning-Based Prediction of CRISPR sgRNA Activity, 2024

Wang, Junli; Chen, Kunpeng; Jin, Bosen; Woo, Wonsik; Lum, Michael; Canchola, Alexa et al.: Pyrolysis of Two Perfluoroalkanesulfonates (PFSAs) and PFSA-Laden Granular Activated Carbon (GAC): Decomposition Mechanisms and the Role of GAC, 2024

Hanasaki, Kota; Ali, Zulfikhar A; Choi, Min; Del Ben, Mauro; Wong, Bryan M: Implementation of real‐time TDDFT for periodic systems in the open‐source PySCF software package, 2023

Jin, Bosen; Zhu, Yiwen; Zhao, Weiyang; Liu, Zekun; Che, Shun; Chen, Kunpeng et al.: Aerobic Biotransformation and Defluorination of Fluoroalkylether Substances (ether PFAS): Substrate Specificity, Pathways, and Applications, 2023

Nguyen, Tran B; Bates, Kelvin H; Buenconsejo, Reina S; Charan, Sophia M; Cavanna, Eric E; Cocker, David R et al.: Overview of ICARUSA Curated, Open Access, Online Repository for Atmospheric Simulation Chamber Data, 2023

Xu, Shanhui; Teng, Xiaoxuan; Li, Yanran: Optimization of Campesterol-Producing Yeast Strains as a Feasible Platform for the Functional Reconstitution of Plant Membrane-Bound Enzymes, 2023

Fauser, Friedrich; Vilarrasa-Blasi, Josep; Onishi, Masayuki; Ramundo, Silvia; Patena, Weronika; Millican, Matthew et al.: Systematic characterization of gene function in the photosynthetic alga Chlamydomonas reinhardtii, 2022

Guo, Xuanming; Asthana, Pallavi; Gurung, Susma; Zhang, Shuo; Wong, Sheung Kin Ken; Fallah, Samane et al.: Regulation of age-associated insulin resistance by MT1-MMP-mediated cleavage of insulin receptor, 2022

Hu, Rongbin; Zhang, Jin; Jawdy, Sara; Sreedasyam, Avinash; Lipzen, Anna; Wang, Mei et al.: Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants, 2022

Iddya, Arpita; Zarzycki, Piotr; Kingsbury, Ryan; Khor, Chia Miang; Ma, Shengcun; Wang, Jingbo et al.: A reverse-selective ion exchange membrane for the selective transport of phosphates via an outer-sphere complexation–diffusion pathway, 2022

Sharma, Bhaskar; Shrivastava, Manoj; Afonso, Luis OB; Soni, Udit; Cahill, David M: Metal doped nitrogenous hydroxyapatite nanohybrids slowly release nitrogen to crops and mitigate ammonia volatilization: An impact assessment, 2022

Sharma, Bhaskar; Afonso, Luis OB; Singh, Manoj Pratap; Soni, Udit; Cahill, David M: Zinc- and magnesium-doped hydroxyapatite-urea nanohybrids enhance wheat growth and nitrogen uptake, 2022

Avasarala, Sumant; Orta, John; Schaefer, Michael; Abernathy, Macon; Ying, Samantha; Liu, Haizhou: Effects of residual disinfectants on the redox speciation of lead( ii )/( iv ) minerals in drinking water distribution systems, 2021

Chiu, Tiffany; Behari, Anita; Chartron, Justin W; Putman, Alexander; Li, Yanran: Exploring the potential of engineering polygalacturonase‐inhibiting protein as an ecological, friendly, and nontoxic pest control agent, 2021

Parker, EA; Grant, SB; Cao, Y; Rippy, MA; McGuire, KJ; Holden, PA et al.: Predicting Solute Transport Through Green Stormwater Infrastructure With Unsteady Transit Time Distribution Theory, 2021

Wu, Sheng; Ma, Xiaoqiang; Zhou, Anqi; Valenzuela, Alex; Zhou, Kang; Li, Yanran: Establishment of strigolactone-producing bacterium-yeast consortium, 2021

Wu, Sheng; Li, Yanran: A Unique Sulfotransferase-Involving Strigolactone Biosynthetic Route in Sorghum, 2021

Zhou, Anqi; Zhou, Kang; Li, Yanran: Rational design strategies for functional reconstitution of plant cytochrome P450s in microbial systems, 2021

Hille, Russ; Young, Tynan; Niks, Dimitri; Hakopian, Sheron; Tam, Timothy K; Yu, Xuejun et al.: Structure: Function Studies of the Cytosolic, Mo- and NAD+-Dependent Formate Dehydrogenase from Cupriavidus necator, 2020

Xu, Shanhui; Li, Yanran: Yeast as a promising heterologous host for steroid bioproduction, 2020

London, AE; Chen, H; Sabuj, MA; Tropp, J; Saghayezhian, M; Eedugurala, N et al.: A high-spin ground-state donor-acceptor conjugated polymer, 2019

Mei, Meng; Li, Junhong; Wang, Shengchen; Lee, Ki Baek; Iverson, Brent L; Zhang, Guimin et al.: Prompting Fab Yeast Surface Display Efficiency by ER Retention and Molecular Chaperon Co-expression, 2019

Schwartz, Cory; Cheng, Jan-Fang; Evans, Robert; Schwartz, Christopher A; Wagner, James M; Anglin, Scott et al.: Validating genome-wide CRISPR-Cas9 function improves screening in the oleaginous yeast Yarrowia lipolytica, 2019

Yu, Xuejun; Niks, Dimitri; Ge, Xin; Liu, Haizhou; Hille, Russ; Mulchandani, Ashok: Synthesis of Formate from CO2 Gas Catalyzed by an O2‑Tolerant NAD-Dependent Formate Dehydrogenase and Glucose Dehydrogenase, 2019

Chen, Kuan-Hui E; Chen, Chuan; Lopez, Tyler; Radecki, Kelly C; Bustamante, Karissa; Lorenson, Mary Y et al.: Use of a novel camelid-inspired human antibody demonstrates the importance of MMP-14 to cancer stem cell function in the metastatic process, 2018

Liu, Fudong; Wang, Hailiang; Sapi, Andras; Tatsumi, Hironori; Zherebetskyy, Danylo; Han, Hui-Ling et al.: Molecular Orientations Change Reaction Kinetics and Mechanism: A Review on Catalytic Alcohol Oxidation in Gas Phase and Liquid Phase on Size-Controlled Pt Nanoparticles, 2018

Lopez, Tyler; Chuan, Chen; Ramirez, Aaron; Chen, Kuan‐Hui E; Lorenson, Mary Y; Benitez, Chris et al.: Epitope‐specific affinity maturation improved stability of potent protease inhibitory antibodies, 2018

Lopez, Tyler; Ramirez, Aaron; Benitez, Chris; Mustafa, Zahid; Pham, Henry; Sanchez, Ramon et al.: Therapeutic targeting of tumor hypoxia and necrosis with antibody α-radioconjugates, 2018

Head, Ashley R; Tang, Xin; Hicks, Zachary; Wang, Linjie; Bleuel, Hannes; Holdren, Scott et al.: Thermal desorption of dimethyl methylphosphonate from MoO3, 2017

Lee, Ki Baek; Nam, Dong Hyun; Nuhn, Jacob AM; Wang, Juan; Schneider, Ian C; Ge, Xin: Direct expression of active human tissue inhibitors of metalloproteinases by periplasmic secretion in Escherichia coli, 2017

Men, Yujie; Yu, Ke; Bælum, Jacob; Gao, Ying; Tremblay, Julien; Prestat, Emmanuel et al.: Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions, 2017

Remacle, Albert G; Cieplak, Piotr; Nam, Dong Hyun; Shiryaev, Sergey A; Ge, Xin; Strongin, Alex Y: Selective function-blocking monoclonal human antibody highlights the important role of membrane type-1 matrix metalloproteinase (MT1-MMP) in metastasis, 2017

Tatsumi, Hironori; Liu, Fudong; Han, Hui-Ling; Carl, Lindsay M; Sapi, Andras; Somorjai, Gabor A: Alcohol Oxidation at Platinum–Gas and Platinum–Liquid Interfaces: The Effect of Platinum Nanoparticle Size, Water Coadsorption, and Alcohol Concentration, 2017

Trotochaud, Lena; Tsyshevsky, Roman; Holdren, Scott; Fears, Kenan; Head, Ashley R; Yu, Yi et al.: Spectroscopic and Computational Investigation of Room-Temperature Decomposition of a Chemical Warfare Agent Simulant on Polycrystalline Cupric Oxide, 2017

Yu, Xuejun; Niks, Dimitri; Mulchandani, Ashok; Hille, Russ: Efficient reduction of CO2 by the molybdenum-containing formate dehydrogenase from Cupriavidus necator (Ralstonia eutropha), 2017

Liu, Haizhou; Bruton, Thomas A; Li, Wei; Van Buren, Jean; Prasse, Carsten; Doyle, Fiona M et al.: Oxidation of Benzene by Persulfate in the Presence of Fe(III)- and Mn(IV)-Containing Oxides: Stoichiometric Efficiency and Transformation Products, 2016

Men, Yujie; Han, Ping; Helbling, Damian E; Jehmlich, Nico; Herbold, Craig; Gulde, Rebekka et al.: Biotransformation of Two Pharmaceuticals by the Ammonia-Oxidizing Archaeon Nitrososphaera gargensis, 2016

Nam, Dong Hyun; Rodriguez, Carlos; Remacle, Albert G; Strongin, Alex Y; Ge, Xin: Active-site MMP-selective antibody inhibitors discovered from convex paratope synthetic libraries, 2016

Badhulika, Sushmee; Terse-Thakoor, Trupti; Villarreal, Claudia; Mulchandani, Ashok: Graphene hybrids: synthesis strategies and applications in sensors and sensitized solar cells, 2015

Lee, Patrick KH; Men, Yujie; Wang, Shanquan; He, Jianzhong; Alvarez-Cohen, Lisa: Development of a Fluorescence-Activated Cell Sorting Method Coupled with Whole Genome Amplification To Analyze Minority and Trace Dehalococcoides Genomes in Microbial Communities, 2015

Men, Yujie; Seth, Erica C; Yi, Shan; Crofts, Terence S; Allen, Robert H; Taga, Michiko E et al.: Identification of specific corrinoids reveals corrinoid modification in dechlorinating microbial communities, 2015

Consortium, The International Wheat Genome Sequencing; Mayer, Klaus FX; Rogers, Jane; Doležel, Jaroslav; Pozniak, Curtis; Eversole, Kellye et al.: A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome, 2014

Crofts, Terence S; Men, Yujie; Alvarez-Cohen, Lisa; Taga, Michiko E: A bioassay for the detection of benzimidazoles reveals their presence in a range of environmental samples, 2014

Dasgupta, Neil P; Sun, Jianwei; Liu, Chong; Brittman, Sarah; Andrews, Sean C; Lim, Jongwoo et al.: 25th Anniversary Article: Semiconductor Nanowires – Synthesis, Characterization, and Applications, 2014

Liu, Haizhou; Bruton, Thomas A; Doyle, Fiona M; Sedlak, David L: In Situ Chemical Oxidation of Contaminated Groundwater by Persulfate: Decomposition by Fe(III)- and Mn(IV)-Containing Oxides and Aquifer Materials, 2014