Open Access Policy Deposits

Schmidt, Jennifer E; Bowles, Timothy M; Gaudin, Amélie CM: Using Ancient Traits to Convert Soil Health into Crop Yield: Impact of Selection on Maize Root and Rhizosphere Function., 2016

Schönhofen, André; Hazard, Brittany; Zhang, Xiaoqin; Dubcovsky, Jorge: Registration of Common Wheat Germplasm with Mutations in SBEII Genes Conferring Increased Grain Amylose and Resistant Starch Content, 2016

Schwahn, Kevin; Küken, Anika; Kliebenstein, Daniel J; Fernie, Alisdair R; Nikoloski, Zoran: Observability of Plant Metabolic Networks Is Reflected in the Correlation of Metabolic Profiles, 2016

Shepherd, Jonathan H; Uray, Ivan P; Mazumdar, Abhijit; Tsimelzon, Anna; Savage, Michelle; Hilsenbeck, Susan G et al.: The SOX11 transcription factor is a critical regulator of basal-like breast cancer growth, invasion, and basal-like gene expression, 2016

Simmonds, James; Scott, Peter; Brinton, Jemima; Mestre, Teresa C; Bush, Max; del Blanco, Alicia et al.: A splice acceptor site mutation in TaGW2-A1 increases thousand grain weight in tetraploid and hexaploid wheat through wider and longer grains, 2016

Speers, Corey; Zhao, Shuang G; Kothari, Vishal; Santola, Alyssa; Liu, Meilan; Wilder-Romans, Kari et al.: Maternal Embryonic Leucine Zipper Kinase (MELK) as a Novel Mediator and Biomarker of Radioresistance in Human Breast Cancer, 2016

Staňková, Helena; Hastie, Alex; Chan, Saki; Vrána, Jan; Tulpová, Zuzana; Kubaláková, Marie et al.: BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes., 2016

Sun, Daoyang; Nandety, Raja Sekhar; Zhang, Yanlong; Reid, Michael S; Niu, Lixin; Jiang, Cai-Zhong: A petunia ethylene-responsive element binding factor, PhERF2 , plays an important role in antiviral RNA silencing, 2016

Suzuki, Nobuhiro; Bassil, Elias; Hamilton, Jason S; Inupakutika, Madhuri A; Zandalinas, Sara Izquierdo; Tripathy, Deesha et al.: ABA Is Required for Plant Acclimation to a Combination of Salt and Heat Stress, 2016

Tirol-Padre, A; Reddy, C; Cassman, K; Verma, Sudhir; Powlson, D; van Kessel, C et al.: Global nitrogen budgets in cereals: A 50-year assessment for maize, rice, and wheat production systems., 2016

Toal, Ted W; Burkart-Waco, Diana; Howell, Tyson; Ron, Mily; Kuppu, Sundaram; Britt, Anne et al.: Indel Group in Genomes (IGG) Molecular Genetic Markers, 2016

Todesco, Marco; Pascual, Mariana A; Owens, Gregory L; Ostevik, Katherine L; Moyers, Brook T; Hübner, Sariel et al.: Hybridization and extinction, 2016

Tulloss, Elise M; Cadenasso, Mary L: The Effect of Nitrogen Deposition on Plant Performance and Community Structure: Is It Life Stage Specific?, 2016

Uray, Iván P; Dmitrovsky, Ethan; Brown, Powel H: Retinoids and rexinoids in cancer prevention: from laboratory to clinic, 2016

Verhille, Christine E; Dabruzzi, Theresa F; Cocherell, Dennis E; Mahardja, Brian; Feyrer, Frederick; Foin, Theodore C et al.: Inter-population differences in salinity tolerance and osmoregulation of juvenile wild and hatchery-born Sacramento splittail., 2016

Viger, Maud; Smith, Hazel K; Cohen, David; Dewoody, Jennifer; Trewin, Harriet; Steenackers, Marijke et al.: Adaptive mechanisms and genomic plasticity for drought tolerance identified in European black poplar (Populus nigra L.), 2016

Voutsina, Nikol; Payne, Adrienne C; Hancock, Robert D; Clarkson, Graham JJ; Rothwell, Steve D; Chapman, Mark A et al.: Characterization of the watercress (Nasturtium officinale R. Br.; Brassicaceae) transcriptome using RNASeq and identification of candidate genes for important phytonutrient traits linked to human health, 2016

Wang, Xiaodong; Yang, Baoju; Li, Kun; Kang, Zhensheng; Cantu, Dario; Dubcovsky, Jorge: A Conserved Puccinia striiformis Protein Interacts with Wheat NPR1 and Reduces Induction of Pathogenesis-Related Genes in Response to Pathogens., 2016

Washburn, Jacob D; Bird, Kevin A; Conant, Gavin C; Pires, J Chris: Convergent Evolution and the Origin of Complex Phenotypes in the Age of Systems Biology, 2016

Wendel, Jonathan; Jackson, Scott; Meyers, Blake; Wing, Rod: Evolution of plant genome architecture., 2016

Westphal, Michael F; Stewart, Joseph AE; Tennant, Erin N; Butterfield, H Scott; Sinervo, Barry: Contemporary Drought and Future Effects of Climate Change on the Endangered Blunt-Nosed Leopard Lizard, Gambelia sila, 2016

Yan, Zhe; Hossain, Md; Valdés-López, Oswaldo; Hoang, Nhung; Zhai, Jixian; Wang, Jun et al.: Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection., 2016

Yang, Zhenzhen; Zhang, Yeting; Wafula, Eric K; Honaas, Loren A; Ralph, Paula E; Jones, Sam et al.: Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation, 2016

Zhang, Yu; Xia, Rui; Kuang, Hanhui; Meyers, Blake: The Diversification of Plant NBS-LRR Defense Genes Directs the Evolution of MicroRNAs That Target Them., 2016

Zhang, Wei; Kwon, Soon-Tae; Chen, Fang; Kliebenstein, Daniel J: Isolate Dependency of Brassica rapa Resistance QTLs to Botrytis cinerea, 2016

Zhao, Liang; Jiang, Xi-Wang; Zuo, Yun-juan; Liu, Xiao-Lin; Chin, Siew-Wai; Haberle, Rosemarie et al.: Multiple Events of Allopolyploidy in the Evolution of the Racemose Lineages in Prunus (Rosaceae) Based on Integrated Evidence from Nuclear and Plastid Data, 2016

Ziegler, Jörg; Schmidt, Stephan; Chutia, Ranju; Müller, Jens; Böttcher, Christoph; Strehmel, Nadine et al.: Non-targeted profiling of semi-polar metabolites in Arabidopsis root exudates uncovers a role for coumarin secretion and lignification during the local response to phosphate limitation., 2016

Zwieniecki, Maciej A; Haaning, Katrine S; Boyce, C Kevin; Jensen, Kaare H: Stomatal design principles in synthetic and real leaves, 2016

Amrine, Katherine CH; Blanco-Ulate, Barbara; Riaz, Summaira; Pap, Dániel; Jones, Laura; Figueroa-Balderas, Rosa et al.: Comparative transcriptomics of Central Asian Vitis vinifera accessions reveals distinct defense strategies against powdery mildew, 2015

Amrine, Katherine CH; Blanco-Ulate, Barbara; Cantu, Dario: Discovery of Core Biotic Stress Responsive Genes in Arabidopsis by Weighted Gene Co-Expression Network Analysis, 2015

Annicchiarico, Paolo; Nazzicari, Nelson; Li, Xuehui; Wei, Yanling; Pecetti, Luciano; Brummer, E Charles: Accuracy of genomic selection for alfalfa biomass yield in different reference populations, 2015

Ariani, Andrea; Gepts, Paul: Genome-wide identification and characterization of aquaporin gene family in common bean (Phaseolus vulgaris L.), 2015

Arms, Erin M; Bloom, Arnold J; St. Clair, Dina A: High-resolution mapping of a major effect QTL from wild tomato Solanum habrochaites that influences water relations under root chilling, 2015

Atwell, Susanna; Corwin, Jason A; Soltis, Nicole E; Subedy, Anushryia; Denby, Katherine J; Kliebenstein, Daniel J: Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity, 2015

Belli Kullan, Jayakumar; Lopes Paim Pinto, Daniela; Bertolini, Edoardo; Fasoli, Marianna; Zenoni, Sara; Tornielli, Giovanni et al.: miRVine: a microRNA expression atlas of grapevine based on small RNA sequencing., 2015

Bjornson, Marta; Song, Xingshun; Dandekar, Abhaya; Franz, Annaliese; Drakakaki, Georgia; Dehesh, Katayoon: A Chemical Genetic Screening Procedure for Arabidopsis thaliana Seedlings., 2015

Blanco-Ulate, Barbara; Amrine, Katherine CH; Collins, Thomas S; Rivero, Rosa M; Vicente, Ariel R; Morales-Cruz, Abraham et al.: Developmental and Metabolic Plasticity of White-Skinned Grape Berries in Response to Botrytis cinerea during Noble Rot, 2015

Bochnia, M; Ziegler, J; Sander, J; Uhlig, A; Schaefer, S; Vollstedt, S et al.: Hypoglycin A Content in Blood and Urine Discriminates Horses with Atypical Myopathy from Clinically Normal Horses Grazing on the Same Pasture., 2015

Bonafede, Marcos D; Tranquilli, Gabriela; Pflüger, Laura A; Peña, Roberto J; Dubcovsky, Jorge: Effect of allelic variation at the Glu-3/Gli-1 loci on breadmaking quality parameters in hexaploid wheat (Triticum aestivum L.), 2015

Brady, Siobhan M; Burow, Meike; Busch, Wolfgang; Carlborg, Örjan; Denby, Katherine J; Glazebrook, Jane et al.: Reassess the t Test: Interact with All Your Data via ANOVA, 2015

Briggs, Jordan; Chen, Shisheng; Zhang, Wenjun; Nelson, Sarah; Dubcovsky, Jorge; Rouse, Matthew N: Mapping of SrTm4, a Recessive Stem Rust Resistance Gene from Diploid Wheat Effective to Ug99., 2015

Brown, Patrick; Saa, Sebastian: Biostimulants in agriculture, 2015

Buhtz, Anja; Witzel, Katja; Strehmel, Nadine; Ziegler, Jörg; Abel, Steffen; Grosch, Rita: Perturbations in the Primary Metabolism of Tomato and Arabidopsis thaliana Plants Infected with the Soil-Borne Fungus Verticillium dahliae., 2015

Burow, Meike; Atwell, Susanna; Francisco, Marta; Kerwin, Rachel E; Halkier, Barbara A; Kliebenstein, Daniel J: The Glucosinolate Biosynthetic Gene AOP2 Mediates Feed-back Regulation of Jasmonic Acid Signaling in Arabidopsis, 2015

Burstein, Matthew D; Tsimelzon, Anna; Poage, Graham M; Covington, Kyle R; Contreras, Alejandro; Fuqua, Suzanne AW et al.: Comprehensive Genomic Analysis Identifies Novel Subtypes and Targets of Triple-Negative Breast Cancer, 2015

Cacho, N Ivalú; Kliebenstein, Daniel J; Strauss, Sharon Y: Macroevolutionary patterns of glucosinolate defense and tests of defense‐escalation and resource availability hypotheses, 2015

Carey, Chelsea J; Beman, J Michael; Eviner, Valerie T; Malmstrom, Carolyn M; Hart, Stephen C: Soil microbial community structure is unaltered by plant invasion, vegetation clipping, and nitrogen fertilization in experimental semi-arid grasslands, 2015

Chakraborty, Sandeep; Rao, Basuthkar J; Dandekar, Abhaya M: PAGAL - Properties and corresponding graphics of alpha helical structures in proteins, 2015

Chakraborty, Sandeep; Phu, My; de Morais, Tâmara Prado; Nascimento, Rafael; Goulart, Luiz Ricardo; Rao, Basuthkar J et al.: The PDB database is a rich source of alpha-helical anti-microbial peptides to combat disease causing pathogens, 2015

Chakraborty, Sandeep; Britton, Monica; Wegrzyn, Jill; Butterfield, Timothy; Martínez-García, Pedro José; Reagan, Russell L et al.: YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut, 2015