Biological Systems & Engineering

Bai, Gali; Dhillon, Namrita; Felton, Colette; Meissner, Brett; Saint-John, Brandon; Shelansky, Robert et al.: Probing chromatin accessibility with small molecule DNA intercalation and nanopore sequencing, 2024

Balestrini, Vitória; Pinto, Otávio; Simmons, Blake; Gladden, John; Krüger, Ricardo; Quirino, Betania: Analysis of novel bacterial metagenome-assembled genomes from lignin-degrading microbial consortia., 2024

Banerjee, Deepanwita; Yunus, Ian S; Wang, Xi; Kim, Jinho; Srinivasan, Aparajitha; Menchavez, Russel et al.: Genome-scale and pathway engineering for the sustainable aviation fuel precursor isoprenol production in Pseudomonas putida, 2024

Baral, Nawa Raj; Banerjee, Deepanwita; Mukhopadhyay, Aindrila; Simmons, Blake A; Singer, Steven W; Scown, Corinne D: Integration of genome-scale metabolic model with biorefinery process model reveals market-competitive carbon-negative sustainable aviation fuel utilizing microbial cell mass lipids and biogenic CO2, 2024

Bose, Baishakhi; Rachbauer, Lydia; Dluger Rios, Elina; Dukes, Faith: Board 160: Empowerment in STEM Day: Introducing High School Girls to Careers at National Laboratories (Work in Progress), 2024

Camargo, Antonio Pedro; Call, Lee; Roux, Simon; Nayfach, Stephen; Huntemann, Marcel; Palaniappan, Krishnaveni et al.: IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata, 2024

Chen, Mingfei; Trotter, Valentine V; Walian, Peter J; Chen, Yan; Lopez, Romario; Lui, Lauren M et al.: Molecular mechanisms and environmental adaptations of flagellar loss and biofilm growth of Rhodanobacter under environmental stress, 2024

Chinnam, Naga babu; Thapar, Roopa; Arvai, Andrew S; Sarker, Altaf H; Soll, Jennifer M; Paul, Tanmoy et al.: ASCC1 structures and bioinformatics reveal a novel helix-clasp-helix RNA-binding motif linked to a two-histidine phosphodiesterase, 2024

Dai, Tao; Valanarasu, Jeya Maria Jose; Zhao, Yifan; Zheng, Shuwen; Sun, Yinong; Patel, Vishal M et al.: Land Resources for Wind Energy Development Requires Regionalized Characterizations, 2024

Dalton, Jutta C; Huntington, Tyler; Pidatala, Venkataramana; Lei, Mengziang; Hill, Cayci; Angeles, Jorge et al.: Impact of Drought Stress on Sorghum bicolor Yield, Deconstruction, and Microbial Conversion Determined in a Feedstocks-to-Fuels Pipeline, 2024

Feng, Su-Su; Wang, Si-Jing; Guo, Lin; Ma, Pan-Pan; Ye, Xiao-Long; Pan, Ming-Lin et al.: Serum bile acid and unsaturated fatty acid profiles of non-alcoholic fatty liver disease in type 2 diabetic patients., 2024

Fontana, Jason; Sparkman-Yager, David; Faulkner, Ian; Cardiff, Ryan; Kiattisewee, Cholpisit; Walls, Aria et al.: Guide RNA structure design enables combinatorial CRISPRa programs for biosynthetic profiling, 2024

Goswami, Shubhasish; Singer, Steven; Simmons, Blake; Awasthi, Deepika: Optimization of electroporation method and promoter evaluation for type-1 methanotroph, Methylotuvimicrobium alcaliphilum., 2024

Harrison, Brendan; McNeil, Wilson; Dai, Tao; Campbell, J; Scown, Corinne: Site Suitability and Air Pollution Impacts of Composting Infrastructure for Californias Organic Waste Diversion Law., 2024

He, Li; McAndrew, Ryan; Barbu, Razvan; Gifford, Grant; Halacoglu, Cari; Drouin-Allaire, Camille et al.: Structure and Interactions of HIV-1 gp41 CHR-NHR Reverse Hairpin Constructs Reveal Molecular Determinants of Antiviral Activity, 2024

Healey, AL; Garsmeur, O; Lovell, JT; Shengquiang, S; Sreedasyam, A; Jenkins, J et al.: The complex polyploid genome architecture of sugarcane, 2024

Hellerschmied, Cathrine; Schritter, Johanna; Waldmann, Niels; Zaduryan, Artur B; Rachbauer, Lydia; Scherr, Kerstin E et al.: Hydrogen storage and geo-methanation in a depleted underground hydrocarbon reservoir, 2024

Hillson, Nathan: Hillson CRADA FP8811 AWD4137 AWD4138 Final Report, 2024

Islam, Azharul; Chakraborty, Anirban; Sarker, Altaf H; Aryal, Uma K; Pan, Lang; Sharma, Gulshan et al.: Site-specific acetylation of polynucleotide kinase 3′-phosphatase regulates its distinct role in DNA repair pathways, 2024

Jiang, Xiaoyu; Wang, Yuli; Guo, Lulu; Wang, Yige; Miao, Tianshu; Ma, Lijuan et al.: The FBXW7-binding sites on FAM83D are potential targets for cancer therapy., 2024

Kakouridis, Anne; Diamond, Spencer; Eng, Thomas; Mills, Heath J; Gámez Holzhaus, Olivia; Summers, Michael L et al.: Desiccated Cyanobacteria Serve As Efficient Plasmid DNA Carriers in Space Flight., 2024

Kinnunen, Patrick C; Humphries, Brock A; Luker, Gary D; Luker, Kathryn E; Linderman, Jennifer J: Characterizing heterogeneous single-cell dose responses computationally and experimentally using threshold inhibition surfaces and dose-titration assays, 2024

Kristensen, Line G; Gupta, Sayan; Chen, Yan; Petzold, Christopher J; Ralston, Corie Y: Residue-Specific Epitope Mapping of the PD-1/Nivolumab Interaction Using X-ray Footprinting Mass Spectrometry, 2024

Kulakowski, Shawn; Rivier, Alex; Kuo, Rita; Mengel, Sonya; Eng, Thomas: Development of modular expression across phylogenetically distinct diazotrophs, 2024

Li, Dan; Zhong, Chenhan; Yang, Mengyuan; He, Li; Chang, Hang; Zhu, Ning et al.: Genetic and microbial determinants of azoxymethane-induced colorectal tumor susceptibility in Collaborative Cross mice and their implication in human cancer, 2024

Liu, Yuzhong; Zhao, Xixi; Gan, Fei; Chen, Xiaoyue; Deng, Kai; Crowe, Samantha A et al.: Complete biosynthesis of QS-21 in engineered yeast, 2024

Llorente, María; Tejedor‐Sanz, Sara; Berná, Antonio; Manchón, Carlos; Esteve‐Núñez, Abraham: Novel electrochemical strategies for the microbial conversion of CO2 into biomass and volatile fatty acids using a fluid‐like bed electrode in a three‐phase reactor, 2024

Lowe, Robert; Overhoff, Marita G; Ramagopalan, Sreeram V; Garbe, James C; Koh, James; Stampfer, Martha R et al.: Author Correction: The senescent methylome and its relationship with cancer, ageing and germline genetic variation in humans, 2024

Luckie, Bridget A; Kashyap, Meera; Pearson, Allison N; Chen, Yan; Liu, Yuzhong; Valencia, Luis E et al.: Development of Corynebacterium glutamicum as a monoterpene production platform, 2024

Lujan, Celia; Tyler, Eleanor Jane; Ecker, Simone; Webster, Amy Philomena; Stead, Eleanor Rachel; Martinez-Miguel, Victoria Eugenia et al.: An expedited screening platform for the discovery of anti-ageing compounds in vitro and in vivo, 2024

Lyu, Xuejiao; Nuhu, Mujaheed; Candry, Pieter; Wolfanger, Jenna; Betenbaugh, Michael; Saldivar, Alexis et al.: Top-down and bottom-up microbiome engineering approaches to enable biomanufacturing from waste biomass., 2024

Maini Rekdal, Vayu; van der Luijt, Casper RB; Chen, Yan; Kakumanu, Ramu; Baidoo, Edward EK; Petzold, Christopher J et al.: Edible mycelium bioengineered for enhanced nutritional value and sensory appeal using a modular synthetic biology toolkit, 2024

Maini Rekdal, Vayu; Villalobos-Escobedo, José Manuel; Rodriguez-Valeron, Nabila; Olaizola Garcia, Mikel; Prado Vásquez, Diego; Rosales, Alexander et al.: Neurospora intermedia from a traditional fermented food enables waste-to-food conversion, 2024

Matt, Georg E; Greiner, Lydia; Record, Rachael A; Wipfli, Heather; Long, Jamie; Dodder, Nathan G et al.: Policy-relevant differences between secondhand and thirdhand smoke: strengthening protections from involuntary exposure to tobacco smoke pollutants, 2024

Mendiburu-Eliçabe, Marina; García-Sancha, Natalia; Corchado-Cobos, Roberto; Martínez-López, Angélica; Chang, Hang; Hua Mao, Jian et al.: NCAPH drives breast cancer progression and identifies a gene signature that predicts luminal a tumour recurrence., 2024

Mohan, Mood; Demerdash, Omar; Simmons, Blake; Singh, Seema; Kidder, Michelle; Smith, Jeremy: Physics-Based Machine Learning Models Predict Carbon Dioxide Solubility in Chemically Reactive Deep Eutectic Solvents., 2024

Mukhopadhyay, A; Hillson, NJ; Keasling, JD: Control of stress tolerance in bacterial host organsms for bioproduction of fuels, 2024

Panich, Justin; Toppari, Emili; Tejedor-Sanz, Sara; Fong, Bonnie; Dugan, Eli; Chen, Yan et al.: Functional plasticity of HCO3 – uptake and CO2 fixation in Cupriavidus necator H16, 2024

Pham, Le; Deng, Kai; Choudhary, Hemant; Northen, Trent; Singer, Steven; Adams, Paul et al.: An Engineered Laccase from Fomitiporia mediterranea Accelerates Lignocellulose Degradation., 2024

Pidatala, Venkataramana R; Lei, Mengziang; Choudhary, Hemant; Petzold, Christopher J; Martin, Hector Garcia; Simmons, Blake A et al.: A miniaturized feedstocks-to-fuels pipeline for screening the efficiency of deconstruction and microbial conversion of lignocellulosic biomass, 2024

Priya, Shweta; Rossbach, Silvia; Eng, Thomas; Lin, Hsiao-Han; Andeer, Peter; Mortimer, Jenny et al.: Assessing horizontal gene transfer in the rhizosphere of Brachypodium distachyon using fabricated ecosystems (EcoFABs)., 2024

Rachbauer, Lydia; Granda, Cesar B; Shrestha, Shilva; Fuchs, Werner; Gabauer, Wolfgang; Singer, Steven W et al.: Energy and nutrient recovery from municipal and industrial waste and wastewater—a perspective, 2024

Raza, Saad; Sarkar, Daipayan; Chan, Leanne Jade G; Mae, Joshua; Sutter, Markus; Petzold, Christopher J et al.: Comparative Pore Structure and Dynamics for Bacterial Microcompartment Shell Protein Assemblies in Sheets or Shells, 2024

Rodrigues, Andria V; Moriarty, Nigel W; Kakumanu, Ramu; DeGiovanni, Andy; Pereira, Jose Henrique; Gin, Jennifer W et al.: Characterization of lignin-degrading enzyme PmdC, which catalyzes a key step in the synthesis of polymer precursor 2-pyrone-4,6-dicarboxylic acid, 2024

Schieppati, Dalma; Mohan, Mood; Blais, Bruno; Fattahi, Kobra; Patience, Gregory; Simmons, Blake et al.: Characterization of the acoustic cavitation in ionic liquids in a horn-type ultrasound reactor., 2024

Shrestha, Shilva; Goswami, Shubhasish; Banerjee, Deepanwita; Garcia, Valentina; Zhou, Elizabeth; Olmsted, Charles N et al.: Perspective on Lignin Conversion Strategies That Enable Next Generation Biorefineries, 2024

Srinivasan, Aparajitha; Chen-Xiao, Kevin; Banerjee, Deepanwita; Oka, Asun; Pidatala, Venkataramana R; Eudes, Aymerick et al.: Sustainable production of 2,3,5,6-Tetramethylpyrazine at high titer in engineered Corynebacterium glutamicum, 2024

Szarzanowicz, Matthew J; Waldburger, Lucas M; Busche, Michael; Geiselman, Gina M; Kirkpatrick, Liam D; Kehl, Alexander J et al.: Binary vector copy number engineering improves Agrobacterium-mediated transformation, 2024

Tan, Justin N; Ratra, Keshav; Singer, Steven W; Simmons, Blake A; Goswami, Shubhasish; Awasthi, Deepika: Methane to bioproducts: unraveling the potential of methanotrophs for biomanufacturing, 2024

Taylor, Brian R; Kumar, Nikhil; Mishra, Dhirendra Kumar; Simmons, Blake A; Choudhary, Hemant; Sale, Kenneth L: Computational Advances in Ionic Liquid Applications for Green Chemistry: A Critical Review of Lignin Processing and Machine Learning Approaches, 2024