Biological Systems & Engineering

Blay, Vincent; Radivojevic, Tijana; Allen, Jonathan E; Hudson, Corey M; Martin, Hector Garcia: MACAW: An Accessible Tool for Molecular Embedding and Inverse Molecular Design, 2022

Cabugao, Kristine Grace M; Gushgari-Doyle, Sara; Chacon, Stephany S; Wu, Xiaoqin; Bhattacharyya, Amrita; Bouskill, Nicholas et al.: Characterizing Natural Organic Matter Transformations by Microbial Communities in Terrestrial Subsurface Ecosystems: A Critical Review of Analytical Techniques and Challenges, 2022

Carruthers, David N; Lee, Taek Soon: Translating advances in microbial bioproduction to sustainable biotechnology, 2022

Chang, Hang; Yang, Xu; Moore, Jade; Liu, Xiao-Ping; Jen, Kuang-Yu; Snijders, Antoine M et al.: From Mouse to Human: Cellular Morphometric Subtype Learned From Mouse Mammary Tumors Provides Prognostic Value in Human Breast Cancer, 2022

Chang, Polly Y; Bakke, James; Rosen, Chris J; Bjornstad, Kathleen A; Mao, Jian-Hua; Blakely, Eleanor A: Heavy-Ion-Induced Lung Tumors: Dose- & LET-Dependence, 2022

Chen, Chyi-Shin; Narani, Akash; Daniyar, Aigerim; McCauley, Joshua; Brown, Sarah; Pray, Todd et al.: Ensemble models of feedstock blend ratios to minimize supply chain risk in bio-based manufacturing, 2022

Chen, Yan; Lease, Nurgul Kaplan; Gin, Jennifer W; Ogorzalek, Tadeusz L; Adams, Paul D; Hillson, Nathan J et al.: Modular automated bottom-up proteomic sample preparation for high-throughput applications, 2022

Chen, Yan; Tsai, Bin; Li, Ningning; Gao, Ning: Structural remodeling of ribosome associated Hsp40-Hsp70 chaperones during co-translational folding., 2022

Choudhary, Hemant; Pidatala, Venkataramana R; Mohan, Mood; Simmons, Blake A; Gladden, John M; Singh, Seema: Renewable Schiff-Base Ionic Liquids for Lignocellulosic Biomass Pretreatment, 2022

Corchado-Cobos, Roberto; García-Sancha, Natalia; Mendiburu-Eliçabe, Marina; Gómez-Vecino, Aurora; Jiménez-Navas, Alejandro; Pérez-Baena, Manuel Jesús et al.: Pathophysiological Integration of Metabolic Reprogramming in Breast Cancer, 2022

Czajka, Jeffrey J; Banerjee, Deepanwita; Eng, Thomas; Menasalvas, Javier; Yan, Chunsheng; Munoz, Nathalie Munoz et al.: Tuning a high performing multiplexed-CRISPRi Pseudomonas putida strain to further enhance indigoidine production, 2022

Ding, Dafa; Yong, Huijuan; You, Na; Lu, Wei; Yang, Xu; Ye, Xiaolong et al.: Prospective Study Reveals Host Microbial Determinants of Clinical Response to Fecal Microbiota Transplant Therapy in Type 2 Diabetes Patients, 2022

Fachko, Devin N; Chen, Yan; Skalsky, Rebecca L: Epstein-Barr Virus miR-BHRF1-3 Targets the BZLF1 3’UTR and Regulates the Lytic Cycle, 2022

Garber, Megan E; Fregoso, Rodrigo; Lake, Julie; Kakouridis, Anne; Mukhopadhyay, Aindrila: Pseudomonas response regulators produced in an E. coli heterologous expression host exhibit host-derived post-translational phosphorylation, 2022

García-Sancha, Natalia; Corchado-Cobos, Roberto; Gómez-Vecino, Aurora; Jiménez-Navas, Alejandro; Pérez-Baena, Manuel Jesús; Blanco-Gómez, Adrián et al.: Evolutionary Origins of Metabolic Reprogramming in Cancer, 2022

Geulig, Laura D; Obst-Huebl, Lieselotte; Nakamura, Kei; Bin, Jianhui; Ji, Qing; Steinke, Sven et al.: Online charge measurement for petawatt laser-driven ion acceleration, 2022

Guix, Ines; Liu, Qi; Pujana, Miquel Angel; Ha, Patrick; Piulats, Josep; Linares, Isabel et al.: Validation of Anticorrelated TGFβ Signaling and Alternative End-Joining DNA Repair Signatures that Predict Response to Genotoxic Cancer TherapyValidation and Predictive Value of the βAlt Score, 2022

Gushgari-Doyle, Sara; Lui, Lauren M; Nielsen, Torben N; Wu, Xiaoqin; Malana, Ria G; Hendrickson, Andrew J et al.: Genotype to ecotype in niche environments: adaptation of Arthrobacter to carbon availability and environmental conditions, 2022

Iwai, Kosuke; Wehrs, Maren; Garber, Megan; Sustarich, Jess; Washburn, Lauren; Costello, Zachary et al.: Scalable and automated CRISPR-based strain engineering using droplet microfluidics, 2022

Kelly, Samantha P; Shende, Vikram V; Flynn, Autumn R; Dan, Qingyun; Ye, Ying; Smith, Janet L et al.: Data Science-Driven Analysis of Substrate-Permissive Diketopiperazine Reverse Prenyltransferase NotF: Applications in Protein Engineering and Cascade Biocatalytic Synthesis of (−)-Eurotiumin A, 2022

Kenneally, Ryan; Lawrence, Quentin; Brydon, Ella; Wan, Kenneth H; Mao, Jian-Hua; Verma, Subhash C et al.: Inactivation of multiple human pathogens by Fathhome's dry sanitizer device: Rapid and eco-friendly ozone-based disinfection, 2022

Kim, Mihyun; Kim, Hyun-Suk; D’Souza, Areetha; Gallagher, Kaitlyn; Jeong, Eunwoo; Topolska-Woś, Agnieszka et al.: Two interaction surfaces between XPA and RPA organize the preincision complex in nucleotide excision repair, 2022

Kuempel, Caitlin D; Tulloch, Vivitskaia JD; Giffin, Alyssa L; Simmons, B Alexander; Hagger, Valerie; Phua, Carol et al.: Identifying management opportunities to combat climate, land, and marine threats across less climate exposed coral reefs, 2022

Leynaud Kieffer Curran, Laure MC; Pham, Le Thanh Mai; Sale, Kenneth L; Simmons, Blake A: Review of advances in the development of laccases for the valorization of lignin to enable the production of lignocellulosic biofuels and bioproducts, 2022

Limbad, Chandani; Doi, Ryosuke; McGirr, Julia; Ciotlos, Serban; Perez, Kevin; Clayton, Zachary S et al.: Senolysis induced by 25-hydroxycholesterol targets CRYAB in multiple cell types, 2022

Lin, Chien-Yuan; Tian, Yang; Nelson-Vasilchik, Kimberly; Hague, Joel; Kakumanu, Ramu; Lee, Mi Yeon et al.: Engineering sorghum for higher 4-hydroxybenzoic acid content, 2022

Lin, Chien-Yuan; Geiselman, Gina M; Liu, Di; Magurudeniya, Harsha D; Rodriguez, Alberto; Chen, Yi-Chun et al.: Evaluation of engineered low-lignin poplar for conversion into advanced bioproducts, 2022

Lin, Hsi-Hsin; Mendez‐Perez, Daniel; Park, Jimin; Wang, Xi; Cheng, Yan; Huo, Jiajie et al.: Precursor prioritization for p-cymene production through synergistic integration of biology and chemistry, 2022

Liu, Zhennan; Huang, Jing; Gu, Yang; Clark, Douglas S; Mukhopadhyay, Aindrila; Keasling, Jay D et al.: Assembly and Evolution of Artificial Metalloenzymes within E. coli Nissle 1917 for Enantioselective and Site-Selective Functionalization of CH and CC Bonds, 2022

Liu, Chun-Li; Xue, Kai; Yang, Yankun; Liu, Xiuxia; Li, Ye; Lee, Taek Soon et al.: Metabolic engineering strategies for sesquiterpene production in microorganism, 2022

Mackelprang, Rebecca; Adamala, Katarzyna P; Aurand, Emily R; Diggans, James C; Ellington, Andrew D; Evans, Samuel Weiss et al.: Making Security Viral: Shifting Engineering Biology Culture and Publishing, 2022

Mao, Xuan-Yu; Perez-Losada, Jesus; Abad, Mar; Rodríguez-González, Marta; Rodríguez, Cesar A; Mao, Jian-Hua et al.: iCEMIGE: Integration of CEll-morphometrics, MIcrobiome, and GEne biomarker signatures for risk stratification in breast cancers, 2022

Mohan, Mood; Keasling, Jay D; Simmons, Blake A; Singh, Seema: In silico COSMO-RS predictive screening of ionic liquids for the dissolution of plastic, 2022

Mohan, Mood; Huang, Kaixuan; Pidatala, Venkataramana R; Simmons, Blake A; Singh, Seema; Sale, Kenneth L et al.: Prediction of solubility parameters of lignin and ionic liquids using multi-resolution simulation approaches, 2022

Otoupal, Peter B; Geiselman, Gina M; Oka, Asun M; Barcelos, Carolina A; Choudhary, Hemant; Dinh, Duy et al.: Advanced one-pot deconstruction and valorization of lignocellulosic biomass into triacetic acid lactone using Rhodosporidium toruloides, 2022

Pallares, Roger M; Charrier, Marimikel; Tejedor-Sanz, Sara; Li, Dong; Ashby, Paul D; Ajo-Franklin, Caroline M et al.: Precision Engineering of 2D Protein Layers as Chelating Biogenic Scaffolds for Selective Recovery of Rare-Earth Elements, 2022

Papa, Gabriella; Simmons, Blake A; Sun, Ning: Scale-Up of the Ionic Liquid-Based Biomass Conversion Processes, 2022

Park, Mee-Rye; Fong, Bonnie; Tofaha, Taqwa; Simmons, Blake A; Singer, Steven: Complete Genome Sequences of Five Isolated Pseudomonas Strains that Catabolize Pentose Sugars and Aromatic Compounds Obtained from Lignocellulosic Biomass, 2022

Pérez Pimienta, José A; Papa, Gabriella; Sun, Jian; Stavila, Vitalie; Sanchez, Arturo; Gladden, John M et al.: One-pot ethanol production under optimized pretreatment conditions using agave bagasse at high solids loading with low-cost biocompatible protic ionic liquid, 2022

Petzold, CJ; Oikawa, ai: Fast-growing high-yield forage crops via a novel biotechnology platform, 2022

Pham, Le Thanh Mai; Choudhary, Hemant; Gauttam, Rahul; Singer, Steven W; Gladden, John M; Simmons, Blake A et al.: Revisiting Theoretical Tools and Approaches for the Valorization of Recalcitrant Lignocellulosic Biomass to Value-Added Chemicals, 2022

Placido, Dante; Dong, Niu; Amer, Bashar; Dong, Chen; Ponciano, Grisel; Kahlon, Talwinder et al.: Downregulation of Squalene Synthase Broadly Impacts Isoprenoid Biosynthesis in Guayule, 2022

Rahaman, Mohammad Shahinur; Tulaphol, Sarttrawut; Hossain, Anwar; Jasinski, Jacek B; Sun, Ning; George, Anthe et al.: Cooperative Brønsted-Lewis acid sites created by phosphotungstic acid encapsulated metal–organic frameworks for selective glucose conversion to 5-hydroxymethylfurfural, 2022

Rashid, Ishtiaque; Tsai, Miaw-Sheue; Sverzhinsky, Aleksandr; Hlaing, Aye Su; Shih, Brian; Thwin, Aye C et al.: Purification and Characterization of Human DNA Ligase IIIα Complexes After Expression in Insect Cells, 2022

Rivera-Lugo, Rafael; Deng, David; Anaya-Sanchez, Andrea; Tejedor-Sanz, Sara; Tang, Eugene; Ruiz, Valeria M Reyes et al.: Listeria monocytogenes requires cellular respiration for NAD+ regeneration and pathogenesis, 2022

Rosi, Matthew; Russell, Brandon; Kristensen, Line G; Farquhar, Erik R; Jain, Rohit; Abel, Donald et al.: An automated liquid jet for fluorescence dosimetry and microsecond radiolytic labeling of proteins, 2022

Saboe, Patrick O; Tomashek, Emily G; Monroe, Hanna R; Haugen, Stefan J; Prestangen, Ryan L; Cleveland, Nick S et al.: Recovery of low molecular weight compounds from alkaline pretreatment liquor via membrane separations, 2022

Sarker, Altaf H: Tobacco-specific nitrosamine 1-(N-methyl-N-nitrosamino)-1-(3-pyridinyl)-4-butanal (NNA) causes DNA damage and impaired replication/transcription in human lung cells, 2022

Sarker, Altaf; Hang, Bo: Tobacco-specific nitrosamine 1-(N-methyl-N-nitrosamino)-1-(3-pyridinyl)-4-butanal (NNA) causes DNA damage and impaired replication/transcription in human lung cells, 2022

Schmidt, Matthias; Pearson, Allison N; Incha, Matthew R; Thompson, Mitchell G; Baidoo, Edward EK; Kakumanu, Ramu et al.: Nitrogen Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing, 2022