Biological Systems & Engineering

Ha, Noel S; de Raad, Markus; Han, La Zhen; Golini, Amber; Petzold, Christopher J; Northen, Trent R: Faster, better, and cheaper: harnessing microfluidics and mass spectrometry for biotechnology, 2021

Hammel, Michal; Rashid, Ishtiaque; Sverzhinsky, Aleksandr; Pourfarjam, Yasin; Tsai, Miaw-Sheue; Ellenberger, Tom et al.: An atypical BRCT–BRCT interaction with the XRCC1 scaffold protein compacts human DNA Ligase IIIα within a flexible DNA repair complex, 2021

Hao, Zhangying; Yogiswara, Sasha; Wei, Tong; Benites, Veronica Teixeira; Sinha, Anagh; Wang, George et al.: Expression of a bacterial 3-dehydroshikimate dehydratase (QsuB) reduces lignin and improves biomass saccharification efficiency in switchgrass (Panicum virgatum L.), 2021

He, Li; Wang, Pin; Schick, Suzyann F; Huang, Abel; Jacob, Peyton; Yang, Xu et al.: Genetic background influences the effect of thirdhand smoke exposure on anxiety and memory in Collaborative Cross mice, 2021

He, Li; Zhou, Yan‐Xia; Zhang, Yuqing; Hang, Bo; Chang, Hang; Schick, Suzaynn F et al.: Thirdhand cigarette smoke leads to age‐dependent and persistent alterations in the cecal microbiome of mice, 2021

Healey, Adam L; Shepherd, Mervyn; King, Graham J; Butler, Jakob B; Freeman, Jules S; Lee, David J et al.: Pests, diseases, and aridity have shaped the genome of Corymbia citriodora, 2021

Hermiz, John; Joseph, Elias; Lee, Kyu Hyun; Baldacci, Isabella A; Chung, Jason E; Frank, Loren M et al.: The impact of reducing signal acquisition specifications on neuronal spike sorting, 2021

Huang, Kaixuan; Mohan, Mood; George, Anthe; Simmons, Blake A; Xu, Yong; Gladden, John M: Integration of acetic acid catalysis with one-pot protic ionic liquid configuration to achieve high-efficient biorefinery of poplar biomass, 2021

Huang, Jing; Liu, Zhennan; Bloomer, Brandon J; Clark, Douglas S; Mukhopadhyay, Aindrila; Keasling, Jay D et al.: Unnatural biosynthesis by an engineered microorganism with heterologously expressed natural enzymes and an artificial metalloenzyme, 2021

Ing, Nicole; Deng, Kai; Chen, Yan; Aulitto, Martina; Gin, Jennifer W; Pham, Thanh Le Mai et al.: A multiplexed nanostructure-initiator mass spectrometry (NIMS) assay for simultaneously detecting glycosyl hydrolase and lignin modifying enzyme activities, 2021

Jabbari, Kosar; Winkelmaier, Garrett; Andersen, Cody; Yaswen, Paul; Quilici, David; Furuta, Saori et al.: Protein Ligands in the Secretome of CD36+ Fibroblasts Induce Growth Suppression in a Subset of Breast Cancer Cell Lines, 2021

Jiang, Chengfei; Yuan, Binbin; Hang, Bo; Mao, Jian-Hua; Zou, Xiaoping; Wang, Pin: FHOD1 is upregulated in gastric cancer and promotes the proliferation and invasion of gastric cancer cells, 2021

Jin, X; Zhang, Y; Celniker, SE; Xia, Y; Mao, J-H; Snijders, AM et al.: Gut microbiome partially mediates and coordinates the effects of genetics on anxiety-like behavior in Collaborative Cross mice, 2021

Jing, Beibei; Ishikawa, Toshiki; Soltis, Nicole; Inada, Noriko; Liang, Yan; Murawska, Gosia et al.: The Arabidopsis thaliana nucleotide sugar transporter GONST2 is a functional homolog of GONST1, 2021

Keasling, Jay; Garcia Martin, Hector; Lee, Taek Soon; Mukhopadhyay, Aindrila; Singer, Steven W; Sundstrom, Eric: Microbial production of advanced biofuels, 2021

Kim, Joonhoon; Coradetti, Samuel T; Kim, Young-Mo; Gao, Yuqian; Yaegashi, Junko; Zucker, Jeremy D et al.: Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides, 2021

Kim, Woojoo E; Charov, Katherine; Džunková, Mária; Becraft, Eric D; Brown, Julia; Schulz, Frederik et al.: Synthase-Selective Exploration of a Tunicate Microbiome by Activity-Guided Single-Cell Genomics, 2021

Kirby, James; Geiselman, Gina M; Yaegashi, Junko; Kim, Joonhoon; Zhuang, Xun; Tran-Gyamfi, Mary Bao et al.: Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass, 2021

Kothari, Ankita; Roux, Simon; Zhang, Hanqiao; Prieto, Anatori; Soneja, Drishti; Chandonia, John-Marc et al.: Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance, 2021

Kristensen, Line G; Holton, James M; Rad, Behzad; Chen, Yan; Petzold, Christopher J; Gupta, Sayan et al.: Hydroxyl radical mediated damage of proteins in low oxygen solution investigated using X‐ray footprinting mass spectrometry, 2021

Lanzio, Vittorino; Gutierrez, Vanessa; Hermiz, John; Bouchard, Kristofer; Cabrini, Stefano: Neural optoelectrodes merging semiconductor scalability with polymeric-like bendability for low damage acute in vivo neuron readout and stimulation, 2021

Lawson, Christopher E; Martí, Jose Manuel; Radivojevic, Tijana; Jonnalagadda, Sai Vamshi R; Gentz, Reinhard; Hillson, Nathan J et al.: Machine learning for metabolic engineering: A review, 2021

Lim, Hyun Gyu; Eng, Thomas; Banerjee, Deepanwita; Alarcon, Geovanni; Lau, Andrew K; Park, Mee-Rye et al.: Generation of Pseudomonas putida KT2440 Strains with Efficient Utilization of Xylose and Galactose via Adaptive Laboratory Evolution, 2021

Lin, Chien-Yuan; Vuu, Khanh M; Amer, Bashar; Shih, Patrick M; Baidoo, Edward EK; Scheller, Henrik V et al.: In-planta production of the biodegradable polyester precursor 2-pyrone-4,6-dicarboxylic acid (PDC): Stacking reduced biomass recalcitrance with value-added co-product, 2021

Liu, Yuzhong; Cruz-Morales, Pablo; Zargar, Amin; Belcher, Michael S; Pang, Bo; Englund, Elias et al.: Biofuels for a sustainable future, 2021

Liu, Hualan; Shiver, Anthony L; Price, Morgan N; Carlson, Hans K; Trotter, Valentine V; Chen, Yan et al.: Functional genetics of human gut commensal Bacteroides thetaiotaomicron reveals metabolic requirements for growth across environments, 2021

Liu, Qi; Palomero, Luis; Moore, Jade; Guix, Ines; Espín, Roderic; Aytés, Alvaro et al.: Loss of TGFβ signaling increases alternative end-joining DNA repair that sensitizes to genotoxic therapies across cancer types, 2021

Liu, Shihong; Gonzalez, Michael; Kong, Celine; Weir, Scott; Socha, Aaron M: Synthesis, antibiotic structure–activity relationships, and cellulose dissolution studies of new room-temperature ionic liquids derived from lignin, 2021

López-Domínguez, José Alberto; Rodríguez-López, Sandra; Ahumada-Castro, Ulises; Desprez, Pierre-Yves; Konovalenko, Maria; Laberge, Remi-Martin et al.: Cdkn1a transcript variant 2 is a marker of aging and cellular senescence, 2021

Lung, Jrhau; Chen, Yi-Chuan; Lin, Yu-Ching; Li, Ya-Chin; You, Liang; Jablons, David M et al.: The effect of cullin 4A on lung cancer cell chemosensitivity to paclitaxel through p33ING1b regulation., 2021

Magurudeniya, Harsha D; Baral, Nawa Raj; Rodriguez, Alberto; Scown, Corinne D; Dahlberg, Jeff; Putnam, Daniel et al.: Use of ensiled biomass sorghum increases ionic liquid pretreatment efficiency and reduces biofuel production cost and carbon footprint, 2021

Mendes, Isis Viana; Garcia, Mariana Botelho; Bitencourt, Ana Carolina Araújo; Santana, Renata Henrique; de Castro Lins, Philippe; Silveira, Rafaella et al.: Bacterial diversity dynamics in microbial consortia selected for lignin utilization, 2021

Miyano, Masaru; Sayaman, Rosalyn W; Shalabi, Sundus F; Senapati, Parijat; Lopez, Jennifer C; Angarola, Brittany Lynn et al.: Breast-Specific Molecular Clocks Comprised of ELF5 Expression and Promoter Methylation Identify Individuals Susceptible to Cancer InitiationNew Breast-Specific Biological Clocks, 2021

Mohan, Mood; Choudhary, Hemant; George, Anthe; Simmons, Blake A; Sale, Kenneth; Gladden, John M: Towards understanding of delignification of grassy and woody biomass in cholinium-based ionic liquids, 2021

Mohanty, Aruna Kumar; Song, Young-eun; Kim, Jung-rae; Kim, Nowon; Paik, Hyun-jong: Phenolphthalein Anilide Based Poly(Ether Sulfone) Block Copolymers Containing Quaternary Ammonium and Imidazolium Cations: Anion Exchange Membrane Materials for Microbial Fuel Cell, 2021

Neri, Francesco; Basisty, Nathan; Desprez, Pierre‐Yves; Campisi, Judith; Schilling, Birgit: Quantitative Proteomic Analysis of the Senescence‐Associated Secretory Phenotype by Data‐Independent Acquisition, 2021

Pang, Bo; Li, Jia; Eiben, Christopher B; Oksen, Ethan; Barcelos, Carolina; Chen, Rong et al.: Lepidopteran mevalonate pathway optimization in Escherichia coli efficiently produces isoprenol analogs for next-generation biofuels, 2021

Panich, Justin; Fong, Bonnie; Singer, Steven W: Metabolic Engineering of Cupriavidus necator H16 for Sustainable Biofuels from CO2, 2021

Pérez-Pimienta, Jose A; García-López, Rocío M; Méndez-Acosta, Hugo O; González-Álvarez, Víctor; Simmons, Blake A; Méndoza-Pérez, Jorge A et al.: Ionic liquid-water mixtures enhance pretreatment and anaerobic digestion of agave bagasse, 2021

Pham, Le Thanh Mai; Deng, Kai; Northen, Trent R; Singer, Steven W; Adams, Paul D; Simmons, Blake A et al.: Experimental and theoretical insights into the effects of pH on catalysis of bond-cleavage by the lignin peroxidase isozyme H8 from Phanerochaete chrysosporium, 2021

Plahar, Hector A; Rich, Thomas N; Lane, Stephen D; Morrell, William C; Springthorpe, Leanne; Nnadi, Oge et al.: BioPartsA Biological Parts Search Portal and Updates to the ICE Parts Registry Software Platform, 2021

Pomraning, Kyle R; Dai, Ziyu; Munoz, Nathalie; Kim, Young-Mo; Gao, Yuqian; Deng, Shuang et al.: Integration of Proteomics and Metabolomics Into the Design, Build, Test, Learn Cycle to Improve 3-Hydroxypropionic Acid Production in Aspergillus pseudoterreus, 2021

Prasanna, Pataje G; Citrin, Deborah E; Hildesheim, Jeffrey; Ahmed, Mansoor M; Venkatachalam, Sundar; Riscuta, Gabriela et al.: Therapy-Induced Senescence: Opportunities to Improve Anti-Cancer Therapy, 2021

Raber, Jacob; Holden, Sarah; Sudhakar, Reetesh; Hall, Reed; Glaeser, Breanna; Lenarczyk, Marek et al.: Effects of 5-Ion Beam Irradiation and Hindlimb Unloading on Metabolic Pathways in Plasma and Brain of Behaviorally Tested WAG/Rij Rats, 2021

Rashid, Ishtiaque; Hammel, Michal; Sverzhinsky, Aleksandr; Tsai, Miaw-Sheue; Pascal, John M; Tainer, John A et al.: Direct interaction of DNA repair protein tyrosyl DNA phosphodiesterase 1 and the DNA ligase III catalytic domain is regulated by phosphorylation of its flexible N-terminus, 2021

Ray, Rebecca; Gallagher, Kevin P; Kring, William; Pitts, Joshua; Simmons, B Alexander: Geolocated dataset of Chinese overseas development finance, 2021

Rodriguez, Alberto; Meadows, Jamie A; Sun, Ning; Simmons, Blake A; Gladden, John M: Evaluation of bacterial hosts for conversion of lignin-derived p-coumaric acid to 4-vinylphenol, 2021

Roy, Somtirtha; Radivojevic, Tijana; Forrer, Mark; Marti, Jose Manuel; Jonnalagadda, Vamshi; Backman, Tyler et al.: Multiomics Data Collection, Visualization, and Utilization for Guiding Metabolic Engineering, 2021

Saleski, Tatyana E; Chung, Meng Ting; Carruthers, David N; Khasbaatar, Azzaya; Kurabayashi, Katsuo; Lin, Xiaoxia Nina: Optimized gene expression from bacterial chromosome by high-throughput integration and screening, 2021

Sarker, Altaf H: DNA glycosylase NEIL2 functions in multiple cellular processes, 2021