Biological Systems & Engineering

Sarker, Altaf: Thirdhand Smoke Exposure Causes Replication Stress and Impaired Transcription in Human Lung Cells, 2020

Sarker, Altaf H; Trego, Kelly S; Zhang, Weiguo; Jacob, Peyton; Snijders, Antoine M; Mao, Jian‐Hua et al.: Thirdhand smoke exposure causes replication stress and impaired transcription in human lung cells, 2020

Seok, Hye-Yeon; Nguyen, Linh Vu; Van Nguyen, Doai; Lee, Sun-Young; Moon, Yong-Hwan: Investigation of a Novel Salt Stress-Responsive Pathway Mediated by Arabidopsis DEAD-Box RNA Helicase Gene AtRH17 Using RNA-Seq Analysis, 2020

Sharma, Rita; Liang, Yan; Lee, Mi Yeon; Pidatala, Venkataramana R; Mortimer, Jenny C; Scheller, Henrik V: Agrobacterium-mediated transient transformation of sorghum leaves for accelerating functional genomics and genome editing studies, 2020

Sharma, Rita; Liang, Yan; Lee, Mi Yeon; Pidatala, Venkataramana R; Mortimer, Jenny C; Scheller, Henrik V: Agrobacterium-mediated transient transformation of sorghum leaves for accelerating functional genomics and genome editing studies, 2020

Skiba, Meredith A; Tran, Collin L; Dan, Qingyun; Sikkema, Andrew P; Klaver, Zachary; Gerwick, William H et al.: Repurposing the GNAT Fold in the Initiation of Polyketide Biosynthesis, 2020

Stampfer, Martha R; Fresques, Tara; Lee, Sun-Young; LaBarge, Mark; Garbe, James: Abstract 5818: The immortalization process as a therapeutic target, 2020

Tang, Weibing; Su, Yang; Yuan, Chen; Zhang, Yuqing; Zhou, Lingling; Peng, Lei et al.: Prospective study reveals a microbiome signature that predicts the occurrence of post-operative enterocolitis in Hirschsprung disease (HSCR) patients, 2020

Thapar, Roopa; Wang, Jing L; Hammel, Michal; Ye, Ruiqiong; Liang, Ke; Sun, Chengcao et al.: Mechanism of efficient double-strand break repair by a long non-coding RNA, 2020

Thompson, Mitchell G; Incha, Matthew R; Pearson, Allison N; Schmidt, Matthias; Sharpless, William A; Eiben, Christopher B et al.: Fatty Acid and Alcohol Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing, 2020

Thompson, Mitchell G; Pearson, Allison N; Barajas, Jesus F; Cruz-Morales, Pablo; Sedaghatian, Nima; Costello, Zak et al.: Identification, Characterization, and Application of a Highly Sensitive Lactam Biosensor from Pseudomonas putida, 2020

Thompson, Mitchell G; Blake-Hedges, Jacquelyn M; Pereira, Jose Henrique; Hangasky, John A; Belcher, Michael S; Moore, William M et al.: An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism, 2020

Tsutakawa, Susan E; Sarker, Altaf H; Ng, Clifford; Arvai, Andrew S; Shin, David S; Shih, Brian et al.: Human XPG nuclease structure, assembly, and activities with insights for neurodegeneration and cancer from pathogenic mutations, 2020

van Munster, Jolanda M; Daly, Paul; Blythe, Martin J; Ibbett, Roger; Kokolski, Matt; Gaddipati, Sanyasi et al.: Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose, 2020

Voisin, Jessica; Farina, Francesca; Naphade, Swati; Fontaine, Morgane; Tshilenge, Kizito‐Tshitoko; Aguirre, Carlos Galicia et al.: FOXO3 targets are reprogrammed as Huntington's disease neural cells and striatal neurons face senescence with p16INK4a increase, 2020

Wan, Kenneth H; Park, Soo; Hess, Becky M; Neff, Michael J; Booth, Benjamin W; Celniker, Susan E: Complete Genome Sequence of the Citrobacter freundii Type Strain., 2020

Wehrs, Maren; Thompson, Mitchell G; Banerjee, Deepanwita; Prahl, Jan-Philip; Morella, Norma M; Barcelos, Carolina A et al.: Investigation of Bar-seq as a method to study population dynamics of Saccharomyces cerevisiae deletion library during bioreactor cultivation, 2020

Wheatley, Paige; Gupta, Sayan; Pandini, Alessandro; Chen, Yan; Petzold, Christopher J; Ralston, Corie Y et al.: Allosteric Priming of E. coli CheY by the Flagellar Motor Protein FliM, 2020

Wu, Xiaoqin; Spencer, Sarah; Gushgari-Doyle, Sara; Yee, Mon Oo; Voriskova, Jana; Li, Yifan et al.: Culturing of “Unculturable” Subsurface Microbes: Natural Organic Carbon Source Fuels the Growth of Diverse and Distinct Bacteria From Groundwater, 2020

Yamanouchi, Sakuya; Rhone, Jordan; Mao, Jian-Hua; Fujiwara, Keigi; Saganti, Premkumar B; Takahashi, Akihisa et al.: Simultaneous Exposure of Cultured Human Lymphoblastic Cells to Simulated Microgravity and Radiation Increases Chromosome Aberrations, 2020

Yang, Minliang; Baral, Nawa Raj; Simmons, Blake A; Mortimer, Jenny C; Shih, Patrick M; Scown, Corinne D: Accumulation of high-value bioproducts in planta can improve the economics of advanced biofuels, 2020

Yang, Xiaohan; Medford, June I; Markel, Kasey; Shih, Patrick M; De Paoli, Henrique C; Trinh, Cong T et al.: Plant Biosystems Design Research Roadmap 1.0, 2020

Zargar, Amin; Valencia, Luis; Wang, Jessica; Lal, Ravi; Chang, Samantha; Werts, Miranda et al.: A bimodular PKS platform that expands the biological design space, 2020

Zargar, Amin; Lal, Ravi; Valencia, Luis; Wang, Jessica; Backman, Tyler William H; Cruz-Morales, Pablo et al.: Chemoinformatic-Guided Engineering of Polyketide Synthases, 2020

Zhang, Jie; Petersen, Søren D; Radivojevic, Tijana; Ramirez, Andrés; Pérez-Manríquez, Andrés; Abeliuk, Eduardo et al.: Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism, 2020

Zhu, Linghua; Wang, Haifeng; Jiang, Chengfei; Li, Wenhuan; Zhai, Shuting; Cai, Xiujun et al.: Clinically applicable 53-Gene prognostic assay predicts chemotherapy benefit in gastric cancer: A multicenter study, 2020

Ando, David; García Martín, Héctor: Genome-Scale 13C Fluxomics Modeling for Metabolic Engineering of Saccharomyces cerevisiae, 2019

Andriani, Grasiella A; Maggi, Elaine; Piqué, Daniel; Zimmerman, Samuel E; Lee, Moonsook; Quispe-Tintaya, Wilber et al.: A direct comparison of interphase FISH versus low-coverage single cell sequencing to detect aneuploidy reveals respective strengths and weaknesses, 2019

Anglada, Teresa; Repullés, Joan; Espinal, Anna; LaBarge, Mark A; Stampfer, Martha R; Genescà, Anna et al.: Delayed γH2AX foci disappearance in mammary epithelial cells from aged women reveals an age-associated DNA repair defect, 2019

Arbel, Hamutal; Basu, Sumanta; Fisher, William W; Hammonds, Ann S; Wan, Kenneth H; Park, Soo et al.: Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy, 2019

Aulitto, Martina; Fusco, Salvatore; Franzén, Carl Johan; Strazzulli, Andrea; Moracci, Marco; Bartolucci, Simonetta et al.: Draft Genome Sequence of Bacillus coagulans MA-13, a Thermophilic Lactic Acid Producer from Lignocellulose, 2019

Aulitto, Martina; Fusco, Salvatore; Limauro, Danila; Fiorentino, Gabriella; Bartolucci, Simonetta; Contursi, Patrizia: Galactomannan degradation by thermophilic enzymes: a hot topic for biotechnological applications, 2019

Aulitto, Martina; Fusco, Salvatore; Nickel, David Benjamin; Bartolucci, Simonetta; Contursi, Patrizia; Franzén, Carl Johan: Seed culture pre-adaptation of Bacillus coagulans MA-13 improves lactic acid production in simultaneous saccharification and fermentation, 2019

Banerjee, Deepanwita; Raghunathan, Anu: Constraints-based analysis identifies NAD+ recycling through metabolic reprogramming in antibiotic resistant Chromobacterium violaceum, 2019

Barajas, Jesus F; Wehrs, Maren; To, Milton; Cruickshanks, Lauchlin; Urban, Rochelle; McKee, Adrienne et al.: Isolation and Characterization of Bacterial Cellulase Producers for Biomass Deconstruction: A Microbiology Laboratory Course, 2019

Barajas, Jesus F; McAndrew, Ryan P; Thompson, Mitchell G; Backman, Tyler WH; Pang, Bo; de Rond, Tristan et al.: Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases, 2019

Baral, Nawa Raj; Sundstrom, Eric R; Das, Lalitendu; Gladden, John; Eudes, Aymerick; Mortimer, Jenny C et al.: Approaches for More Efficient Biological Conversion of Lignocellulosic Feedstocks to Biofuels and Bioproducts, 2019

Baral, Nawa Raj; Kavvada, Olga; Mendez-Perez, Daniel; Mukhopadhyay, Aindrila; Lee, Taek Soon; Simmons, Blake A et al.: Techno-economic analysis and life-cycle greenhouse gas mitigation cost of five routes to bio-jet fuel blendstocks, 2019

Bhalla, Aditya; Cai, Charles M; Xu, Feng; Singh, Sandip K; Bansal, Namita; Phongpreecha, Thanaphong et al.: Performance of three delignifying pretreatments on hardwoods: hydrolysis yields, comprehensive mass balances, and lignin properties., 2019

Bhalla, Aditya; Cai, Charles M; Xu, Feng; Singh, Sandip K; Bansal, Namita; Phongpreecha, Thanaphong et al.: Performance of three delignifying pretreatments on hardwoods: hydrolysis yields, comprehensive mass balances, and lignin properties, 2019

Bouchez, P; Benites, V Teixeira; Baidoo, EEK; Mortimer, JC; Sullivan, ML; Scheller, HV et al.: Production of clovamide and its analogues in Saccharomyces cerevisiae and Lactococcus lactis, 2019

Ceja-Navarro, Javier A; Karaoz, Ulas; Bill, Markus; Hao, Zhao; White, Richard A; Arellano, Abelardo et al.: Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle, 2019

Chen, Yan; Guenther, Joel M; Gin, Jennifer W; Chan, Leanne Jade G; Costello, Zak; Ogorzalek, Tadeusz L et al.: Automated “Cells-To-Peptides” Sample Preparation Workflow for High-Throughput, Quantitative Proteomic Assays of Microbes, 2019

Chen, Kun; Luan, Xiaoting; Liu, Qisha; Wang, Jianwei; Chang, Xinxia; Snijders, Antoine M et al.: Drosophila Histone Demethylase KDM5 Regulates Social Behavior through Immune Control and Gut Microbiota Maintenance, 2019

Chen, Yan; Fachko, Devin; Ivanov, Nikita S; Skinner, Camille M; Skalsky, Rebecca L: Epstein-Barr virus microRNAs regulate B cell receptor signal transduction and lytic reactivation, 2019

Chen, Yan; Barat, Bidisha; Ray, W Keith; Helm, Richard F; Melville, Stephen B; Popham, David L: Membrane Proteomes and Ion Transporters in Bacillus anthracis and Bacillus subtilis Dormant and Germinating Spores., 2019

Chen, Yan; Vu, Jonathan; Thompson, Mitchell G; Sharpless, William A; Chan, Leanne Jade G; Gin, Jennifer W et al.: A rapid methods development workflow for high-throughput quantitative proteomic applications, 2019

Dan, Qingyun; Newmister, Sean A; Klas, Kimberly R; Fraley, Amy E; McAfoos, Timothy J; Somoza, Amber D et al.: Fungal indole alkaloid biogenesis through evolution of a bifunctional reductase/Diels–Alderase, 2019

Ding, Lina; Su, Ying; Fassl, Anne; Hinohara, Kunihiko; Qiu, Xintao; Harper, Nicholas W et al.: Perturbed myoepithelial cell differentiation in BRCA mutation carriers and in ductal carcinoma in situ, 2019

Dong, Jie; Chen, Yan; Benites, Veronica Teixeira; Baidoo, Edward EK; Petzold, Christopher J; Beller, Harry R et al.: Methyl ketone production by Pseudomonas putida is enhanced by plant‐derived amino acids, 2019