Biological Systems & Engineering

Sridharan, Deepa M; Enerio, Shiena; Wang, Chris; LaBarge, Mark A; Stampfer, Martha R; Pluth, Janice M: Genetic variation and radiation quality impact cancer promoting cellular phenotypes in response to HZE exposure, 2019

Stampfer, MR; Baltimore, D; Huang, AS: Absence of interference during high-multiplicity infection by clonally purified vesicular stomatitis virus, 2019

Stampfer, MR; Zajchowski, D; Band, V; Pauzie, N; Tager, A; Sager, R: Expression of growth factors and oncogenes in normal and tumor-derived human mammary epithelial cells, 2019

Thompson, Mitchell G; Blake-Hedges, Jacquelyn M; Cruz-Morales, Pablo; Barajas, Jesus F; Curran, Samuel C; Eiben, Christopher B et al.: Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Pseudomonas putida Lysine Metabolism, 2019

Thompson, Mitchell G; Valencia, Luis E; Blake-Hedges, Jacquelyn M; Cruz-Morales, Pablo; Velasquez, Alexandria E; Pearson, Allison N et al.: Omics-driven identification and elimination of valerolactam catabolism in Pseudomonas putida KT2440 for increased product titer, 2019

Tian, Tian; Kang, Jing Wei; Kang, Aram; Lee, Taek Soon: Redirecting Metabolic Flux via Combinatorial Multiplex CRISPRi-Mediated Repression for Isopentenol Production in Escherichia coli, 2019

Wang, Pin; Wang, Yunshan; Langley, Sasha A; Zhou, Yan-Xia; Jen, Kuang-Yu; Sun, Qi et al.: Diverse tumour susceptibility in Collaborative Cross mice: identification of a new mouse model for human gastric tumourigenesis, 2019

Wang, Shizeng; Cheng, Gang; Dong, Jie; Tian, Tian; Lee, Taek Soon; Mukhopadhyay, Aindrila et al.: Tolerance Characterization and Isoprenol Production of Adapted Escherichia coli in the Presence of Ionic Liquids, 2019

Wehrs, Maren; Prahl, Jan-Philip; Moon, Jadie; Li, Yuchen; Tanjore, Deepti; Keasling, Jay D et al.: Correction to: Production efficiency of the bacterial non-ribosomal peptide indigoidine relies on the respiratory metabolic state in S. cerevisiae, 2019

Wehrs, Maren; Prahl, Jan-Philip; Moon, Jadie; Li, Yuchen; Tanjore, Deepti; Keasling, Jay D et al.: Correction to: Production efficiency of the bacterial non-ribosomal peptide indigoidine relies on the respiratory metabolic state in S. cerevisiae, 2019

Wehrs, Maren; Tanjore, Deepti; Eng, Thomas; Lievense, Jeff; Pray, Todd R; Mukhopadhyay, Aindrila: Engineering Robust Production Microbes for Large-Scale Cultivation, 2019

Wehrs, Maren; Gladden, John M; Liu, Yuzhong; Platz, Lukas; Prahl, Jan-Philip; Moon, Jadie et al.: Sustainable bioproduction of the blue pigment indigoidine: Expanding the range of heterologous products in R. toruloides to include non-ribosomal peptides, 2019

Wiley, Christopher D; Brumwell, Alexis N; Davis, Sonnet S; Jackson, Julia R; Valdovinos, Alexis; Calhoun, Cheresa et al.: Secretion of leukotrienes by senescent lung fibroblasts promotes pulmonary fibrosis., 2019

Wiley, Christopher D; Liu, Su; Limbad, Chandani; Zawadzka, Anna M; Beck, Jennifer; Demaria, Marco et al.: SILAC Analysis Reveals Increased Secretion of Hemostasis-Related Factors by Senescent Cells, 2019

Xu, Qixia; Long, Qilai; Zhu, Dexiang; Fu, Da; Zhang, Boyi; Han, Liu et al.: Targeting amphiregulin (AREG) derived from senescent stromal cells diminishes cancer resistance and averts programmed cell death 1 ligand (PD‐L1)‐mediated immunosuppression, 2019

Yang, Mingkun; Zhao, Wenwen; Singh, Seema; Simmons, Blake; Cheng, Gang: On the solution structure of kraft lignin in ethylene glycol and its implication for nanoparticle preparation, 2019

Zargar, Amin; Chang, Samantha; Kothari, Ankita; Snijders, Antoine M; Mao, Jian‐Hua; Wang, Jessica et al.: Overcoming the challenges of cancer drug resistance through bacterial‐mediated therapy, 2019

Zhao, Yue; Yang, Shao-Min; Jin, Yu-Lan; Xiong, Guang-Wu; Wang, Pin; Snijders, Antoine M et al.: A Robust Gene Expression Prognostic Signature for Overall Survival in High‐Grade Serous Ovarian Cancer, 2019

Zhao, Yue; Yang, Shao-Min; Jin, Yu-Lan; Xiong, Guang-Wu; Wang, Pin; Snijders, Antoine M et al.: A Robust Gene Expression Prognostic Signature for Overall Survival in High-Grade Serous Ovarian Cancer, 2019

Zhivagui, Maria; Ng, Alvin WT; Ardin, Maude; Churchwell, Mona I; Pandey, Manuraj; Renard, Claire et al.: Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans, 2019

Zhou, Yan‐Xia; Fuentes‐Creollo, Gabriela; Ponce, Frank; Langley, Sasha A; Jen, Kuang‐Yu; Celniker, Susan E et al.: No difference in 4‐nitroquinoline induced tumorigenesis between germ‐free and colonized mice, 2019

Zhuang, Xun; Kilian, Oliver; Monroe, Eric; Ito, Masakazu; Tran-Gymfi, Mary Bao; Liu, Fang et al.: Monoterpene production by the carotenogenic yeast Rhodosporidium toruloides, 2019

Zhuang, Xun; Kilian, Oliver; Monroe, Eric; Ito, Masakazu; Tran-Gymfi, Mary Bao; Liu, Fang et al.: Monoterpene production by the carotenogenic yeast Rhodosporidium toruloides, 2019

Aaboud, M; Aad, G; Abbott, B; Abdinov, O; Abeloos, B; Abidi, SH et al.: Measurements of tt¯ differential cross-sections of highly boosted top quarks decaying to all-hadronic final states in pp collisions at s=13 TeV using the ATLAS detector, 2018

Aaboud, M; Aad, G; Abbott, B; Abdinov, O; Abeloos, B; Abidi, SH et al.: Search for exclusive Higgs and Z boson decays to ϕγ and ργ with the ATLAS detector, 2018

Aaboud, M; Aad, G; Abbott, B; Abdinov, O; Abeloos, B; Abidi, SH et al.: Search for new phenomena using the invariant mass distribution of same-flavour opposite-sign dilepton pairs in events with missing transverse momentum in s=13 Tepp collisions with the ATLAS detector, 2018

Aaboud, M; Aad, G; Abbott, B; Abdinov, O; Abeloos, B; Abidi, SH et al.: Search for photonic signatures of gauge-mediated supersymmetry in 13 TeV pp collisions with the ATLAS detector, 2018

Aaboud, M; Aad, G; Abbott, B; Abdinov, O; Abeloos, B; Abidi, SH et al.: Search for squarks and gluinos in final states with jets and missing transverse momentum using 36 fb-1 of s=13 TeV pp collision data with the ATLAS detector, 2018

Aaboud, M; Aad, G; Abbott, B; Abdinov, O; Abeloos, B; Abidi, SH et al.: Search for the Decay of the Higgs Boson to Charm Quarks with the ATLAS Experiment, 2018

Aaboud, M; Aad, G; Abbott, B; Abdinov, O; Abeloos, B; Abidi, SH et al.: Search for the standard model Higgs boson produced in association with top quarks and decaying into a bb¯ pair in pp collisions at s=13 TeV with the ATLAS detector, 2018

Alonso‐Gutierrez, Jorge; Koma, Daisuke; Hu, Qijun; Yang, Yuchen; Chan, Leanne JG; Petzold, Christopher J et al.: Toward industrial production of isoprenoids in Escherichia coli: Lessons learned from CRISPR‐Cas9 based optimization of a chromosomally integrated mevalonate pathway, 2018

Ando, David; Garcia Martin, Hector: Two-Scale 13C Metabolic Flux Analysis for Metabolic Engineering, 2018

Aulitto, Martina; Fusco, Francesca Anna; Fiorentino, Gabriella; Bartolucci, Simonetta; Contursi, Patrizia; Limauro, Danila: A thermophilic enzymatic cocktail for galactomannans degradation, 2018

Backman, Tyler WH; Ando, David; Singh, Jahnavi; Keasling, Jay D; Martín, Héctor García: Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for 13C Metabolic Flux Analysis, 2018

Bakula, Daniela; Aliper, Alexander M; Mamoshina, Polina; Petr, Michael A; Teklu, Amanuel; Baur, Joseph A et al.: Aging and drug discovery, 2018

Barajas, Jesus F; Zargar, Amin; Pang, Bo; Benites, Veronica T; Gin, Jennifer; Baidoo, Edward EK et al.: Biochemical Characterization of β‐Amino Acid Incorporation in Fluvirucin B2 Biosynthesis, 2018

Barajas, Jesus F; Zargar, Amin; Pang, Bo; Benites, Veronica T; Gin, Jennifer; Baidoo, Edward EK et al.: Cover Feature: Biochemical Characterization of β‐Amino Acid Incorporation in Fluvirucin B2 Biosynthesis (ChemBioChem 13/2018), 2018

Barrila, Jennifer; Crabbé, Aurélie; Yang, Jiseon; Franco, Karla; Nydam, Seth D; Forsyth, Rebecca J et al.: Modeling Host-Pathogen Interactions in the Context of the Microenvironment: Three-Dimensional Cell Culture Comes of Age, 2018

Beller, Harry R; Rodrigues, Andria V; Zargar, Kamrun; Wu, Yu-Wei; Saini, Avneesh K; Saville, Renee M et al.: Discovery of enzymes for toluene synthesis from anoxic microbial communities, 2018

Boice, John D; Kronenberg, Amy; Ullrich, Robert L: R. J. Michael Fry, MD19252017, 2018

Booth, Benjamin W; McParland, Charles; Beattie, Keith; Fisher, William W; Hammonds, Ann S; Celniker, Susan E et al.: OpenHiCAMM: High-Content Screening Software for Complex Microscope Imaging Workflows., 2018

Bouxin, Florent P; Strub, Henri; Dutta, Tanmoy; Aguilhon, Julie; Morgan, Trevor J; Mingardon, Florence et al.: Elucidating transfer hydrogenation mechanisms in non-catalytic lignin depolymerization, 2018

Budin, Itay; de Rond, Tristan; Chen, Yan; Chan, Leanne Jade G; Petzold, Christopher J; Keasling, Jay D: Viscous control of cellular respiration by membrane lipid composition, 2018

Butler, Jakob B; Freeman, Jules S; Potts, Brad M; Vaillancourt, René E; Grattapaglia, Dario; Silva-Junior, Orzenil B et al.: Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus., 2018

Butler, Jakob B; Freeman, Jules S; Potts, Brad M; Vaillancourt, René E; Grattapaglia, Dario; Silva-Junior, Orzenil B et al.: Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus, 2018

Chang, Hang; Han, Ju; Zhong, Cheng; Snijders, Antoine M; Mao, Jian-Hua: Unsupervised Transfer Learning via Multi-Scale Convolutional Sparse Coding for Biomedical Applications, 2018

Chen, En-Guo; Wang, Pin; Lou, Haizhou; Wang, Yunshan; Yan, Hong; Bi, Lei et al.: A robust gene expression-based prognostic risk score predicts overall survival of lung adenocarcinoma patients, 2018

Chen, Yuchao; Mao, Pan; Snijders, Antoine M; Wang, Daojing: Senescence chips for ultrahigh‐throughput isolation and removal of senescent cells, 2018

Chinta, Shankar J; Woods, Georgia; Demaria, Marco; Rane, Anand; Zou, Ying; McQuade, Amanda et al.: Cellular Senescence Is Induced by the Environmental Neurotoxin Paraquat and Contributes to Neuropathology Linked to Parkinson’s Disease, 2018

Coates, R Cameron; Bowen, Benjamin P; Oberortner, Ernst; Thomashow, Linda; Hadjithomas, Michalis; Zhao, Zhiying et al.: An integrated workflow for phenazine-modifying enzyme characterization, 2018