Biological Systems & Engineering

Tejedor-Sanz, Sara; Song, Young Eun; Sundstrom, Eric: Utilization of formic acid by extremely thermoacidophilic archaea species., 2024

Theobald, Sebastian; Vesth, Tammi C; Geib, Elena; Nybo, Jane L; Frisvad, Jens C; Larsen, Thomas O et al.: Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation, 2024

Tian, Yang; Gao, Yu; Turumtay, Halbay; Turumtay, Emine; Chai, Yen; Choudhary, Hemant et al.: Engineered reduction of S-adenosylmethionine alters lignin in sorghum., 2024

Torres-Tiji, Y; Sethuram, H; Gupta, A; McCauley, J; Dutra-Molino, J-V; Pathania, R et al.: Bioinformatic Prediction and High Throughput In Vivo Screening to Identify Cis-Regulatory Elements for the Development of Algal Synthetic Promoters., 2024

Turumtay, Emine Akyuz; Turumtay, Halbay; Tian, Yang; Lin, Chien-Yuan; Chai, Yen Ning; Louie, Katherine B et al.: Expression of dehydroshikimate dehydratase in poplar induces transcriptional and metabolic changes in the phenylpropanoid pathway, 2024

Wei, Hongcheng; Yu, Qiurun; Chen, Danrong; Zhang, Mingzhi; Guan, Quanquan; Hang, Bo et al.: Residential energy transition and chronic respiratory diseases., 2024

Wilkes, Rebecca A; Borchert, Andrew J; Garcia, Valentina E; Geiselman, Gina M; Liu, Sarah; Guss, Adam M et al.: Comparison of microbial strains as candidate hosts and genetic reservoirs for the valorization of lignin streams, 2024

Winegar, Peter H; Hudson, Graham A; Dell, Luisa B; Astolfi, Maria CT; Reed, James; Payet, Rocky D et al.: Verazine biosynthesis from simple sugars in engineered Saccharomyces cerevisiae, 2024

Yang, Hui; Wang, Xinzhi; Blanco-Gómez, Adrián; He, Li; García-Sancha, Natalia; Corchado-Cobos, Roberto et al.: A susceptibility gene signature for ERBB2-driven mammary tumour development and metastasis in collaborative cross mice., 2024

Yunus, Ian S; Hudson, Graham A; Chen, Yan; Gin, Jennifer W; Kim, Joonhoon; Baidoo, Edward EK et al.: Systematic engineering for production of anti-aging sunscreen compound in Pseudomonas putida, 2024

Backman, Tyler WH; Schenk, Christina; Radivojevic, Tijana; Ando, David; Singh, Jahnavi; Czajka, Jeffrey J et al.: BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale, 2023

Berezin, Casey-Tyler; Aguilera, Luis U; Billerbeck, Sonja; Bourne, Philip E; Densmore, Douglas; Freemont, Paul et al.: Ten simple rules for managing laboratory information, 2023

Bilbao, Aivett; Munoz, Nathalie; Kim, Joonhoon; Orton, Daniel J; Gao, Yuqian; Poorey, Kunal et al.: PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements, 2023

Blankenship, Brian W; Jones, Zachary; Zhao, Naichen; Singh, Harpreet; Sarkar, Adrisha; Li, Runxuan et al.: Complex Three-Dimensional Microscale Structures for Quantum Sensing Applications, 2023

Bosch, Justin; Keith, Nathan; Escobedo, Felipe; LaGraff, James; Rabasco, Jorden; Wan, Kenneth et al.: Molecular and functional characterization of the Drosophila melanogaster conserved smORFome., 2023

Carruthers, David N; Kim, Jinho; Mendez-Perez, Daniel; Monroe, Eric; Myllenbeck, Nick; Liu, Yuzhong et al.: Microbial production of high octane and high sensitivity olefinic ester biofuels, 2023

Chakraborty, Anirban; Tapryal, Nisha; Islam, Azharul; Sarker, Altaf H; Manohar, Kodavati; Mitra, Joy et al.: Human DNA polymerase η promotes RNA-templated error-free repair of DNA double-strand breaks, 2023

Chen, Yan; Gin, Jennifer W; Wang, Ying; de Raad, Markus; Tan, Stephen; Hillson, Nathan J et al.: Alkaline-SDS cell lysis of microbes with acetone protein precipitation for proteomic sample preparation in 96-well plate format, 2023

Chen, Xiaoyue; Hudson, Graham A; Mineo, Charlotte; Amer, Bashar; Baidoo, Edward EK; Crowe, Samantha A et al.: Deciphering triterpenoid saponin biosynthesis by leveraging transcriptome response to methyl jasmonate elicitation in Saponaria vaccaria, 2023

Chen, Lijuan; Guo, Lin; Feng, Susu; Wang, Congcong; Cui, Zhicheng; Wang, Sijing et al.: Fecal microbiota transplantation ameliorates type 2 diabetes via metabolic remodeling of the gut microbiota in db/db mice., 2023

Choi, Julius; Rodriguez, Alberto; Simmons, Blake A; Gladden, John M: Valorization of Hemp-Based Packaging Waste with One-Pot Ionic Liquid Technology, 2023

Dai, Tao; Valanarasu, Jeya Maria Jose; Patel, Vishal M; Jordaan, Sarah M: The life cycle land use of natural gas-fired electricity in the US Western interconnection, 2023

Demarteau, Jeremy; Cousineau, Benjamin; Wang, Zilong; Bose, Baishakhi; Cheong, Seokjung; Lan, Guangxu et al.: Biorenewable and circular polydiketoenamine plastics, 2023

Deng, Kai; Wang, Xi; Ing, Nicole; Opgenorth, Paul; de Raad, Markus; Kim, Jinho et al.: Rapid quantification of alcohol production in microorganisms based on nanostructure-initiator mass spectrometry (NIMS), 2023

Densmore, Douglas; Hillson, Nathan J; Klavins, Eric; Myers, Chris; Peccoud, Jean; Stracquadanio, Giovanni: Introduction to the Special Issue on BioFoundries and Cloud Laboratories, 2023

Di, Xueni; Ortega-Alarcon, David; Kakumanu, Ramu; Iglesias-Fernandez, Javier; Diaz, Lucia; Baidoo, Edward EK et al.: MEP pathway products allosterically promote monomerization of deoxy-D-xylulose-5-phosphate synthase to feedback-regulate their supply, 2023

Dou, Chang; Choudhary, Hemant; Wang, Zilong; Baral, Nawa R; Mohan, Mood; Aguilar, Rolin A et al.: A hybrid chemical-biological approach can upcycle mixed plastic waste with reduced cost and carbon footprint, 2023

Eng, Thomas; Banerjee, Deepanwita; Menasalvas, Javier; Chen, Yan; Gin, Jennifer; Choudhary, Hemant et al.: Maximizing microbial bioproduction from sustainable carbon sources using iterative systems engineering, 2023

Englund, Elias; Schmidt, Matthias; Nava, Alberto A; Lechner, Anna; Deng, Kai; Jocic, Renee et al.: Expanding Extender Substrate Selection for Unnatural Polyketide Biosynthesis by Acyltransferase Domain Exchange within a Modular Polyketide Synthase., 2023

Faddegon, Bruce; Blakely, Eleanor A; Burigo, Lucas; Censor, Yair; Dokic, Ivana; Kondo, Naoki Domínguez et al.: Ionization detail parameters and cluster dose: a mathematical model for selection of nanodosimetric quantities for use in treatment planning in charged particle radiotherapy, 2023

Fisher, William W; Hammonds, Ann S; Weiszmann, Richard; Booth, Benjamin W; Gevirtzman, Louis; Patton, Jaeda EJ et al.: A modERN resource: identification of Drosophila transcription factor candidate target genes using RNAi, 2023

Fuchs, Werner; Rachbauer, Lydia; Rittmann, Simon K-MR; Bochmann, Günther; Ribitsch, Doris; Steger, Franziska: Eight Up-Coming Biotech Tools to Combat Climate Crisis, 2023

Garber, Megan; Frank, Vered; Kazakov, Alexey; Incha, Matthew; Nava, Alberto; Zhang, Hanqiao et al.: REC protein family expansion by the emergence of a new signaling pathway., 2023

Garcia, Valentina E; Pidatala, Venkataramana; Barcelos, Carolina A; Liu, Dupeng; Otoupal, Peter; Wendt, Oliver et al.: Enhanced microbial production of protocatechuate from engineered sorghum using an integrated feedstock-to-product conversion technology, 2023

Gauttam, Rahul; Eng, Thomas; Zhao, Zhiying; Rana, Qurrat ul ain; Simmons, Blake A; Yoshikuni, Yasuo et al.: Development of genetic tools for heterologous protein expression in a pentose‐utilizing environmental isolate of Pseudomonas putida, 2023

Goff, Jennifer L; Chen, Yan; Thorgersen, Michael P; Hoang, Linh T; Poole, Farris L; Szink, Elizabeth G et al.: Mixed heavy metal stress induces global iron starvation response, 2023

Gohil, Dhara; Sarker, Altaf H; Roy, Rabindra: Base Excision Repair: Mechanisms and Impact in Biology, Disease, and Medicine, 2023

Gómez-Vecino, Aurora; Corchado-Cobos, Roberto; Blanco-Gómez, Adrián; García-Sancha, Natalia; Castillo-Lluva, Sonia; Martín-García, Ana et al.: Intermediate Molecular Phenotypes to Identify Genetic Markers of Anthracycline-Induced Cardiotoxicity Risk., 2023

Gordon, Ascelin; Jones, Julia; Maron, Martine; Schulte To Bühne, Henrike; Sharma, Roshan; Sonter, Laura et al.: Evaluating the impact of biodiversity offsetting on native vegetation., 2023

Gupta, Sayan; Inman, Jamie L; Chant, Jared De; Obst-Huebl, Lieselotte; Nakamura, Kei; Costello, Shawn M et al.: A Novel Platform for Evaluating Dose Rate Effects on Oxidative Damage to Peptides: Toward a High-Throughput Method to Characterize the Mechanisms Underlying the FLASH Effect, 2023

Hillson, Nathan J: A Procedural Framework for Benchmarking Biofoundry Capabilities, 2023

Hirakawa, Matthew P; Rodriguez, Alberto; Tran-Gyamfi, Mary B; Light, Yooli K; Martinez, Salvador; Diamond-Pott, Henry et al.: Phenothiazines Rapidly Induce Laccase Expression and Lignin-Degrading Properties in the White-Rot Fungus Phlebia radiata, 2023

Huang, Jing; Quest, Andrew; Cruz-Morales, Pablo; Deng, Kai; Pereira, Jose; Van Cura, Devon et al.: Complete integration of carbene-transfer chemistry into biosynthesis., 2023

Huff, Janice L; Poignant, Floriane; Rahmanian, Shirin; Khan, Nafisah; Blakely, Eleanor A; Britten, Richard A et al.: Galactic cosmic ray simulation at the NASA space radiation laboratory – Progress, challenges and recommendations on mixed-field effects, 2023

Huntington, Tyler; Baral, Nawa Raj; Yang, Minliang; Sundstrom, Eric; Scown, Corinne D: Machine learning for surrogate process models of bioproduction pathways, 2023

Islam, Azharul; Chakraborty, Anirban; Gambardella, Stefano; Campopiano, Rosa; Sarker, Altaf H; Boldogh, Istvan et al.: Functional analysis of a conserved site mutation in the DNA end processing enzyme PNKP leading to ataxia with oculomotor apraxia type 4 in humans, 2023

Islam, Azharul; Chakraborty, Anirban; Sarker, Altaf H; Aryal, Uma K; Sharma, Gulshan; Boldogh, Istvan et al.: Site-specific acetylation of polynucleotide kinase 3’-phosphatase (PNKP) regulates its distinct role in DNA repair pathways, 2023

Kim, Changman; Wolf, Isaac; Dou, Chang; Magnusson, Lauren; Maness, Pin-Ching; Chou, Katherine J et al.: Coupling gas purging with inorganic carbon supply to enhance biohydrogen production with Clostridium thermocellum, 2023

Kim, Jinho; Lee, Taek Soon: Enhancing isoprenol production by systematically tuning metabolic pathways using CRISPR interference in E. coli, 2023

Lankiewicz, Thomas S; Choudhary, Hemant; Gao, Yu; Amer, Bashar; Lillington, Stephen P; Leggieri, Patrick A et al.: Lignin deconstruction by anaerobic fungi, 2023