Biological Systems & Engineering

Collaboration, The ATLAS; Aaboud, M; Aad, G; Abbott, B; Abdallah, J; Abdinov, O et al.: Measurement of jet fragmentation in 5.02 TeV proton–lead and proton–proton collisions with the ATLAS detector, 2018

Collaboration, The ATLAS; Aaboud, M; Aad, G; Abbott, B; Abdinov, O; Abeloos, B et al.: Search for a heavy Higgs boson decaying into a Z boson and another heavy Higgs boson in the ℓℓbb final state in pp collisions at s = 13 TeV with the ATLAS detector, 2018

Collaboration, The ATLAS; Aaboud, M; Aad, G; Abbott, B; Abdinov, O; Abeloos, B et al.: Search for Higgs boson decays into pairs of light (pseudo)scalar particles in the γγjj final state in pp collisions at s = 13 TeV with the ATLAS detector, 2018

Coradetti, Samuel T; Pinel, Dominic; Geiselman, Gina M; Ito, Masakazu; Mondo, Stephen J; Reilly, Morgann C et al.: Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides, 2018

Costello, Zak; Martin, Hector Garcia: A machine learning approach to predict metabolic pathway dynamics from time-series multiomics data, 2018

Czajka, Jeffrey J; Nathenson, Justin A; Benites, Veronica T; Baidoo, Edward EK; Cheng, Qianshun; Wang, Yechun et al.: Engineering the oleaginous yeast Yarrowia lipolytica to produce the aroma compound β-ionone, 2018

Czajka, Jeffrey J; Abernathy, Mary H; Benites, Veronica T; Baidoo, Edward EK; Deming, Jody W; Tang, Yinjie J: Model metabolic strategy for heterotrophic bacteria in the cold ocean based on Colwellia psychrerythraea 34H, 2018

Davies, Alexander E; Albeck, John G: Microenvironmental Signals and Biochemical Information Processing: Cooperative Determinants of Intratumoral Plasticity and Heterogeneity, 2018

del Mar Sáez-Freire, María; Blanco-Gómez, Adrián; Castillo-Lluva, Sonia; Gómez-Vecino, Aurora; Galvis-Jiménez, Julie Milena; Martín-Seisdedos, Carmen et al.: Supplementary data for the biological age linked to oxidative stress modifies breast cancer aggressiveness, 2018

Denby, Charles M; Li, Rachel A; Vu, Van T; Costello, Zak; Lin, Weiyin; Chan, Leanne Jade G et al.: Industrial brewing yeast engineered for the production of primary flavor determinants in hopped beer, 2018

Deng, Kai; Zeng, Jijiao; Cheng, Gang; Gao, Jian; Sale, Kenneth L; Simmons, Blake A et al.: Rapid characterization of the activities of lignin-modifying enzymes based on nanostructure-initiator mass spectrometry (NIMS), 2018

Di Modugno, Francesca; Spada, Sheila; Palermo, Belinda; Visca, Paolo; Iapicca, Pierluigi; Di Carlo, Anna et al.: hMENA isoforms impact NSCLC patient outcome through fibronectin/β1 integrin axis, 2018

Dossani, Zain Y; Apel, Amanda Reider; Szmidt‐Middleton, Heather; Hillson, Nathan J; Deutsch, Samuel; Keasling, Jay D et al.: A combinatorial approach to synthetic transcription factor‐promoter combinations for yeast strain engineering, 2018

Ebert, Berit; Birdseye, Devon; Liwanag, April JM; Laursen, Tomas; Rennie, Emilie A; Guo, Xiaoyuan et al.: The Three Members of the Arabidopsis Glycosyltransferase Family 92 are Functional β-1,4-Galactan Synthases, 2018

Ellinghaus, Thomas L; Pereira, Jose H; McAndrew, Ryan P; Welner, Ditte H; DeGiovanni, Andy M; Guenther, Joel M et al.: Engineering glycoside hydrolase stability by the introduction of zinc binding, 2018

Eng, Clara H; Backman, Tyler WH; Bailey, Constance B; Magnan, Christophe; Martín, Héctor García; Katz, Leonard et al.: ClusterCAD: a computational platform for type I modular polyketide synthase design, 2018

Eng, Thomas; Demling, Philipp; Herbert, Robin A; Chen, Yan; Benites, Veronica; Martin, Joel et al.: Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC, 2018

Eudes, Aymerick; Berthomieu, Roland; Hao, Zhangying; Zhao, Nanxia; Benites, Veronica Teixeira; Baidoo, Edward EK et al.: Production of muconic acid in plants, 2018

Furuta, Saori; Ren, Gang; Mao, Jian-Hua; Bissell, Mina J: Laminin signals initiate the reciprocal loop that informs breast-specific gene expression and homeostasis by activating NO, p53 and microRNAs, 2018

Garber, Megan E; Rajeev, Lara; Kazakov, Alexey E; Trinh, Jessica; Masuno, Duy; Thompson, Mitchell G et al.: Multiple signaling systems target a core set of transition metal homeostasis genes using similar binding motifs, 2018

Garsmeur, Olivier; Droc, Gaetan; Antonise, Rudie; Grimwood, Jane; Potier, Bernard; Aitken, Karen et al.: A mosaic monoploid reference sequence for the highly complex genome of sugarcane, 2018

George, Kevin W; Thompson, Mitchell G; Kim, Joonhoon; Baidoo, Edward EK; Wang, George; Benites, Veronica Teixeira et al.: Integrated analysis of isopentenyl pyrophosphate (IPP) toxicity in isoprenoid-producing Escherichia coli, 2018

Goyal, Garima; Costello, Zak; Alonso-Gutierrez, Jorge; Kang, Aram; Lee, Taek Soon; Martin, Hector Garcia et al.: Parallel Integration and Chromosomal Expansion of Metabolic Pathways, 2018

Hang, Bo; Wang, Yunshan; Huang, Yurong; Wang, Pin; Langley, Sasha A; Bi, Lei et al.: Short-term early exposure to thirdhand cigarette smoke increases lung cancer incidence in mice., 2018

Higgins, Douglas A; Young, Megan KM; Tremaine, Mary; Sardi, Maria; Fletcher, Jenna M; Agnew, Margaret et al.: Natural Variation in the Multidrug Efflux Pump SGE1 Underlies Ionic Liquid Tolerance in Yeast, 2018

Iwai, Kosuke; Ando, David; Kim, Peter W; Gach, Phillip C; Raje, Manasi; Duncomb, Todd A et al.: Automated Flow-Based/Digital Microfluidic Platform Integrated with Onsite Electroporation Process for Multiplex Genetic Engineering Applications, 2018

Jokela, Tiina A; Engelsen, Agnete ST; Rybicka, Agata; Vatter, Fanny A Pelissier; Garbe, James C; Miyano, Masaru et al.: Microenvironment-Induced Non-sporadic Expression of the AXL and cKIT Receptors Are Related to Epithelial Plasticity and Drug Resistance, 2018

Junk, DJ; Cipriano, R; Stampfer, M; Jackson, MW: Constitutive CCND1/CDK2 activity substitutes for p53 loss, or MYC or oncogenic RAS expression in the transformation of human mammary epithelial cells, 2018

Keenan, Alexandra B; Jenkins, Sherry L; Jagodnik, Kathleen M; Koplev, Simon; He, Edward; Torre, Denis et al.: The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations, 2018

Kim, Junghyun; Han, Sewoon; Lei, Andy; Miyano, Masaru; Bloom, Jessica; Srivastava, Vasudha et al.: Characterizing cellular mechanical phenotypes with mechano-node-pore sensing, 2018

Kimbrel, Jeffrey A; Ballor, Nicholas; Wu, Yu-Wei; David, Maude M; Hazen, Terry C; Simmons, Blake A et al.: Microbial Community Structure and Functional Potential Along a Hypersaline Gradient, 2018

Kjærbølling, Inge; Vesth, Tammi C; Frisvad, Jens C; Nybo, Jane L; Theobald, Sebastian; Kuo, Alan et al.: Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species, 2018

Kohli, Jaskaren; Campisi, Judith; Demaria, Marco: A novel suicide gene therapy for the treatment of p16Ink4a-overexpressing tumors, 2018

Kolinko, Sebastian; Wu, Yu-Wei; Tachea, Firehiwot; Denzel, Evelyn; Hiras, Jennifer; Gabriel, Raphael et al.: A bacterial pioneer produces cellulase complexes that persist through community succession, 2018

Krink-Koutsoubelis, Nicolas; Loechner, Anne C; Lechner, Anna; Link, Hannes; Denby, Charles M; Vögeli, Bastian et al.: Engineered Production of Short-Chain Acyl-Coenzyme A Esters in Saccharomyces cerevisiae, 2018

Kudron, Michelle M; Victorsen, Alec; Gevirtzman, Louis; Hillier, LaDeana W; Fisher, William W; Vafeados, Dionne et al.: The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors, 2018

Laursen, Tomas; Stonebloom, Solomon H; Pidatala, Venkataramana R; Birdseye, Devon S; Clausen, Mads H; Mortimer, Jenny C et al.: Bifunctional glycosyltransferases catalyze both extension and termination of pectic galactan oligosaccharides, 2018

Lee, Jonathan K; Bloom, Jessica; Zubeldia-Plazaola, Arantzazu; Garbe, James C; Stampfer, Martha R; LaBarge, Mark A: Different culture media modulate growth, heterogeneity, and senescence in human mammary epithelial cell cultures, 2018

Lee, Sun-Young; Bissell, Mina J: A Functionally Robust Phenotypic Screen that Identifies Drug Resistance-associated Genes Using 3D Cell Culture., 2018

Li, Guotian; Jones, Kyle C; Eudes, Aymerick; Pidatala, Venkataramana R; Sun, Jian; Xu, Feng et al.: Overexpression of a rice BAHD acyltransferase gene in switchgrass (Panicum virgatum L.) enhances saccharification, 2018

Liang, Ling; Li, Chenlin; He, Qian; Tachea, Firehiwot; Tanjore, Deepti; Luong, Tina et al.: Upgrading of Postconsumer Absorbent Hygiene Products for Bioethanol Production, 2018

Liu, Xiaoyan; Bi, Lei; Wang, Qin; Wen, Mingxin; Li, Ce; Ren, Yidan et al.: miR-1204 targets VDR to promotes epithelial-mesenchymal transition and metastasis in breast cancer, 2018

Liu, Chun-Li; Tian, Tian; Alonso-Gutierrez, Jorge; Garabedian, Brett; Wang, Shuai; Baidoo, Edward EK et al.: Renewable production of high density jet fuel precursor sesquiterpenes from Escherichia coli, 2018

Martino, Elena; Morin, Emmanuelle; Grelet, Gwen‐Aëlle; Kuo, Alan; Kohler, Annegret; Daghino, Stefania et al.: Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists, 2018

Meadows, Corey W; Mingardon, Florence; Garabedian, Brett M; Baidoo, Edward EK; Benites, Veronica T; Rodrigues, Andria V et al.: Discovery of novel geranylgeranyl reductases and characterization of their substrate promiscuity, 2018

Meadows, Corey W; Kang, Aram; Lee, Taek S: Metabolic Engineering for Advanced Biofuels Production and Recent Advances Toward Commercialization, 2018

Mueller, Phillipp; Gauttam, Rahul; Raab, Nadja; Handrick, René; Wahl, Claudia; Leptihn, Sebastian et al.: High level in vivo mucin-type glycosylation in Escherichia coli, 2018

Mukherjee, Supratim; Seshadri, Rekha; Varghese, Neha J; Eloe-Fadrosh, Emiley A; Meier-Kolthoff, Jan P; Göker, Markus et al.: Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life, 2018

Oyetunde, Tolutola; Bao, Forrest Sheng; Chen, Jiung-Wen; Martin, Hector Garcia; Tang, Yinjie J: Leveraging knowledge engineering and machine learning for microbial bio-manufacturing, 2018

Palluk, Sebastian; Arlow, Daniel H; de Rond, Tristan; Barthel, Sebastian; Kang, Justine S; Bector, Rathin et al.: De novo DNA synthesis using polymerase-nucleotide conjugates, 2018