Biological Systems & Engineering

Banerjee, Deepanwita; Parmar, Dharmeshkumar; Bhattacharya, Nivedita; Ghanate, Avinash D; Panchagnula, Venkateswarlu; Raghunathan, Anu: A scalable metabolite supplementation strategy against antibiotic resistant pathogen Chromobacterium violaceum induced by NAD+/NADH+ imbalance, 2017

Barajas, Jesus F; Blake-Hedges, Jacquelyn M; Bailey, Constance B; Curran, Samuel; Keasling, Jay D: Engineered polyketides: Synergy between protein and host level engineering, 2017

Bi, Lei; Yan, Xiaojing; Yang, Ye; Qian, Lei; Tian, Yuan; Mao, Jian-Hua et al.: The component formula of Salvia Miltiorrhiza and Panax Ginseng induces apoptosis and inhibits cell invasion and migration through targeting PTEN in lung cancer cells, 2017

Birkel, Garrett W; Ghosh, Amit; Kumar, Vinay S; Weaver, Daniel; Ando, David; Backman, Tyler WH et al.: Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism, 2017

Birkel, Garrett W; Ghosh, Amit; Kumar, Vinay S; Weaver, Daniel; Ando, David; Backman, Tyler WH et al.: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism, 2017

Bissell, Mina J; Ewald, Andrew: Goodbye flat biology – time for the 3rd and the 4th dimensions, 2017

Bouchard, KE; Bujan, AF; Roosta-Khorasani, F; Ubaru, S; Prabhat,; Snijders, AM et al.: Union of Intersections (UoI) for interpretable data driven discovery and prediction, 2017

Bouxin, FP; Zhang, X; Kings, IN; Lee, AF; Simmons, MJH; Wilson, K et al.: Deactivation study of the hydrodeoxygenation of p-methylguaiacol over silica supported rhodium and platinum catalysts, 2017

Campen, Saori Amaike; Lynn, Jed; Sibert, Stephanie J; Srikrishnan, Sneha; Phatale, Pallavi; Feldman, Taya et al.: Expression of naturally ionic liquid-tolerant thermophilic cellulases in Aspergillus niger, 2017

Cañueto, J; Cardeñoso‐Álvarez, E; García‐Hernández, JL; Galindo‐Villardón, P; Vicente‐Galindo, P; Vicente‐Villardón, JL et al.: MicroRNA (miR)‐203 and miR‐205 expression patterns identify subgroups of prognosis in cutaneous squamous cell carcinoma, 2017

Chubukov, Victor; Desmarais, John James; Wang, George; Chan, Leanne Jade G; Baidoo, Edward EK; Petzold, Christopher J et al.: Engineering glucose metabolism of Escherichia coli under nitrogen starvation, 2017

Conboy, John G: Developmental regulation of RNA processing by Rbfox proteins, 2017

Cornish-Bowden, Athel; Cornish-Bowden, Athel; Rasnick, David; Heng, Henry H; Horne, Steven; Abdallah, Batoul et al.: Abstracts from the 3rd Conference on Aneuploidy and Cancer: Clinical and Experimental Aspects, 2017

Daly, Paul; van Munster, Jolanda M; Blythe, Martin J; Ibbett, Roger; Kokolski, Matt; Gaddipati, Sanyasi et al.: Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments, 2017

Dauer, Lawrence T; Ainsbury, Elizabeth A; Dynlacht, Joseph; Hoel, David; Klein, Barbara EK; Mayer, Donald et al.: Guidance on radiation dose limits for the lens of the eye: overview of the recommendations in NCRP Commentary No. 26, 2017

de Rond, Tristan; Stow, Parker; Eigl, Ian; Johnson, Rebecca E; Chan, Leanne Jade G; Goyal, Garima et al.: Oxidative cyclization of prodigiosin by an alkylglycerol monooxygenase-like enzyme, 2017

Demaria, Marco; O'Leary, Monique N; Chang, Jianhui; Shao, Lijian; Liu, Su; Alimirah, Fatouma et al.: Cellular Senescence Promotes Adverse Effects of Chemotherapy and Cancer Relapse, 2017

Dutta, Arijit; Eckelmann, Bradley; Adhikari, Sanjay; Ahmed, Kazi Mokim; Sengupta, Shiladitya; Pandey, Arvind et al.: Microhomology-mediated end joining is activated in irradiated human cells due to phosphorylation-dependent formation of the XRCC1 repair complex, 2017

d’Espaux, Leo; Ghosh, Amit; Runguphan, Weerawat; Wehrs, Maren; Xu, Feng; Konzock, Oliver et al.: Engineering high-level production of fatty alcohols by Saccharomyces cerevisiae from lignocellulosic feedstocks, 2017

Eudes, Aymerick; Dutta, Tanmoy; Deng, Kai; Jacquet, Nicolas; Sinha, Anagh; Benites, Veronica T et al.: SbCOMT (Bmr12) is involved in the biosynthesis of tricin-lignin in sorghum, 2017

Fernández-Bayo, Jesús D; Achmon, Yigal; Harrold, Duff R; Claypool, Joshua T; Simmons, Blake A; Singer, Steven W et al.: Comparison of soil biosolarization with mesophilic and thermophilic solid digestates on soil microbial quantity and diversity, 2017

Fiore, Ana Paula Zen Petisco; Spencer, Virginia A; Mori, Hidetoshi; Carvalho, Hernandes F; Bissell, Mina J; Bruni-Cardoso, Alexandre: Laminin-111 and the Level of Nuclear Actin Regulate Epithelial Quiescence via Exportin-6, 2017

Fraley, Amy E; Garcia-Borràs, Marc; Tripathi, Ashootosh; Khare, Dheeraj; Mercado-Marin, Eduardo V; Tran, Hong et al.: Function and Structure of MalA/MalA′, Iterative Halogenases for Late-Stage C–H Functionalization of Indole Alkaloids, 2017

Fukushima, Tatsuya; Gupta, Sayan; Rad, Behzad; Cornejo, Jose A; Petzold, Christopher J; Chan, Leanne Jade G et al.: The Molecular Basis for Binding of an Electron Transfer Protein to a Metal Oxide Surface, 2017

Fuzer, Angelina M; Lee, Sun‐Young; Mott, Joni D; Cominetti, Marcia R: [10]‐Gingerol Reverts Malignant Phenotype of Breast Cancer Cells in 3D Culture, 2017

Gach, Philip C; Iwai, Kosuke; Kim, Peter W; Hillson, Nathan J; Singh, Anup K: Droplet microfluidics for synthetic biology, 2017

Gaglione, Rosa; Pirone, Luciano; Farina, Biancamaria; Fusco, Salvatore; Smaldone, Giovanni; Aulitto, Martina et al.: Insights into the anticancer properties of the first antimicrobial peptide from Archaea, 2017

Gillies, Taryn E; Pargett, Michael; Minguet, Marta; Davies, Alex E; Albeck, John G: Linear Integration of ERK Activity Predominates over Persistence Detection in Fra-1 Regulation, 2017

Gradia, Scott D; Ishida, Justin P; Tsai, Miaw-Sheue; Jeans, Chris; Tainer, John A; Fuss, Jill O: Chapter One MacroBac: New Technologies for Robust and Efficient Large-Scale Production of Recombinant Multiprotein Complexes, 2017

Handley, KM; Piceno, YM; Hu, P; Tom, LM; Mason, OU; Andersen, GL et al.: Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill, 2017

Hang, Bo; Wang, Pin; Zhao, Yue; Sarker, Altaf; Chenna, Ahmed; Xia, Yankai et al.: Adverse Health Effects of Thirdhand Smoke: From Cell to Animal Models, 2017

Hang, Bo; Snijders, Antoine M; Huang, Yurong; Schick, Suzaynn F; Wang, Pin; Xia, Yankai et al.: Early exposure to thirdhand cigarette smoke affects body mass and the development of immunity in mice, 2017

Haushalter, Robert W; Phelan, Ryan M; Hoh, Kristina M; Su, Cindy; Wang, George; Baidoo, Edward EK et al.: Production of Odd-Carbon Dicarboxylic Acids in Escherichia coli Using an Engineered Biotin–Fatty Acid Biosynthetic Pathway, 2017

He, Zhi-Hui; Chen, Yan; Chen, Ping; He, Sheng-Dong; Zeng, Hui-Hui; Ye, Ji-Ru et al.: 5-Aza-2'-deoxycytidine protects against emphysema in mice via suppressing p16Ink4a expression in lung tissue, 2017

He, Lian; Xiu, Yu; Jones, J Andrew; Baidoo, Edward EK; Keasling, Jay D; Tang, Yinjie J et al.: Deciphering flux adjustments of engineered E. coli cells during fermentation with changing growth conditions, 2017

Hernandez-Segura, Alejandra; de Jong, Tristan V; Melov, Simon; Guryev, Victor; Campisi, Judith; Demaria, Marco: Unmasking Transcriptional Heterogeneity in Senescent Cells, 2017

Hooper, Cornelia M; Stevens, Tim J; Saukkonen, Anna; Castleden, Ian R; Singh, Pragya; Mann, Gregory W et al.: Multiple marker abundance profiling: combining selected reaction monitoring and data‐dependent acquisition for rapid estimation of organelle abundance in subcellular samples, 2017

Hu, Zhi; Mao, Jian-Hua; Curtis, Christina; Huang, Ge; Gu, Shenda; Heiser, Laura et al.: Erratum to: Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer, 2017

Hu, Ping; Dubinsky, Eric A; Probst, Alexander J; Wang, Jian; Sieber, Christian MK; Tom, Lauren M et al.: Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders, 2017

Hu, P; Dubinsky, EA; Probst, AJ; Wang, J; Sieber, CMK; Tom, LM et al.: Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders, 2017

Huang, Yu-Shan; Delgadillo, Luis F; Cyr, Kathryn H; Kingsley, Paul D; An, Xiuli; McGrath, Kathleen E et al.: Circulating primitive erythroblasts establish a functional, protein 4.1R-dependent cytoskeletal network prior to enucleating, 2017

Jacob, Peyton; Benowitz, Neal L; Destaillats, Hugo; Gundel, Lara; Hang, Bo; Martins-Green, Manuela et al.: Thirdhand Smoke: New Evidence, Challenges, and Future Directions, 2017

Jensen, Heather M; Eng, Thomas; Chubukov, Victor; Herbert, Robin A; Mukhopadhyay, Aindrila: Improving membrane protein expression and function using genomic edits, 2017

Jeon, Ok Hee; Kim, Chaekyu; Laberge, Remi-Martin; Demaria, Marco; Rathod, Sona; Vasserot, Alain P et al.: Local clearance of senescent cells attenuates the development of post-traumatic osteoarthritis and creates a pro-regenerative environment, 2017

Jorgens, Danielle M; Inman, Jamie L; Wojcik, Michal; Robertson, Claire; Palsdottir, Hildur; Tsai, Wen-Ting et al.: Deep nuclear invaginations are linked to cytoskeletal filaments – integrated bioimaging of epithelial cells in 3D culture, 2017

Kang, Aram; Meadows, Corey W; Canu, Nicolas; Keasling, Jay D; Lee, Taek Soon: High-throughput enzyme screening platform for the IPP-bypass mevalonate pathway for isopentenol production, 2017

Kim, Eun-Mi; Woo, Han Min; Tian, Tian; Yilmaz, Suzan; Javidpour, Pouya; Keasling, Jay D et al.: Autonomous control of metabolic state by a quorum sensing (QS)-mediated regulator for bisabolene production in engineered E. coli, 2017

Kim, Kwang Ho; Dutta, Tanmoy; Walter, Eric D; Isern, Nancy G; Cort, John R; Simmons, Blake A et al.: Chemoselective Methylation of Phenolic Hydroxyl Group Prevents Quinone Methide Formation and Repolymerization During Lignin Depolymerization, 2017

Kim, Kwang Ho; Dutta, Tanmoy; Ralph, John; Mansfield, Shawn D; Simmons, Blake A; Singh, Seema: Impact of lignin polymer backbone esters on ionic liquid pretreatment of poplar, 2017

Kohler, Amanda C; Mills, Matthew JL; Adams, Paul D; Simmons, Blake A; Sale, Kenneth L: Structure of aryl O-demethylase offers molecular insight into a catalytic tyrosine-dependent mechanism, 2017