Open Access Policy Deposits

Vazquez, Alexei; Beg, Qasim K; deMenezes, Marcio A; Ernst, Jason; Bar-Joseph, Ziv; Barabási, Albert-László et al.: Impact of the solvent capacity constraint on E. coli metabolism, 2008

Anderson, Daniel H; Kickhoefer, Valerie A; Sievers, Stuart A; Rome, Leonard H; Eisenberg, David: Draft Crystal Structure of the Vault Shell at 9-Å Resolution, 2007

Chin, Hang Gyeong; Estève, Pierre-Olivier; Pradhan, Mihika; Benner, Jack; Patnaik, Debasis; Carey, Michael F et al.: Automethylation of G9a and its implication in wider substrate specificity and HP1 binding, 2007

Ernst, Jason; Vainas, Oded; Harbison, Christopher T; Simon, Itamar; Bar-Joseph, Ziv: Reconstructing dynamic regulatory maps, 2007

Hurtado, Cecilia; De Robertis, E M: Neural induction in the absence of organizer in salamanders is mediated by MAPK, 2007

Kurdistani, SK: Histone modifications as markers of cancer prognosis: a cellular view, 2007

Pham, Hung; Ferrari, Roberto; Cokus, Shawn J; Kurdistani, Siavash K; Pellegrini, Matteo: Modeling the regulatory network of histone acetylation in Saccharomyces cerevisiae, 2007

Sander, Veronika; Reversade, Bruno; De Robertis, EM: The opposing homeobox genes Goosecoid and Vent1/2 self‐regulate Xenopus patterning, 2007

Schacherer, Joseph; Ruderfer, Douglas M; Gresham, David; Dolinski, Kara; Botstein, David; Kruglyak, Leonid: Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains, 2007

Zhang, Xiaoyu; Clarenz, Oliver; Cokus, Shawn; Bernatavichute, Yana V; Pellegrini, Matteo; Goodrich, Justin et al.: Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis, 2007

Chan, Simon W-L; Henderson, Ian R; Zhang, Xiaoyu; Shah, Govind; Chien, Jason S-C; Jacobsen, Steven E: RNAi, DRD1, and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in Arabidopsis, 2006

Chan, Simon W-L; Zhang, Xiaoyu; Bernatavichute, Yana V; Jacobsen, Steven E: Two-Step Recruitment of RNA-Directed DNA Methylation to Tandem Repeats, 2006

Chow, Edward K; Castrillo, Antonio; Shahangian, Arash; Pei, Liming; O'Connell, Ryan M; Modlin, Robert L et al.: A role for IRF3-dependent RXRα repression in hepatotoxicity associated with viral infections, 2006

Eberle, Michael A; Rieder, Mark J; Kruglyak, Leonid; Nickerson, Deborah A: Allele Frequency Matching Between SNPs Reveals an Excess of Linkage Disequilibrium in Genic Regions of the Human Genome, 2006

Ernst, Jason; Bar-Joseph, Ziv: STEM: a tool for the analysis of short time series gene expression data, 2006

Gatbonton, Tonibelle; Imbesi, Maria; Nelson, Melisa; Akey, Joshua M; Ruderfer, Douglas M; Kruglyak, Leonid et al.: Telomere Length as a Quantitative Trait: Genome-Wide Survey and Genetic Mapping of Telomere Length-Control Genes in Yeast, 2006

GUO, FENG; GOODING, ANNE R; CECH, THOMAS R: Comparison of crystal structure interactions and thermodynamics for stabilizing mutations in the Tetrahymena ribozyme, 2006

Egea, Pascal F; Stroud, Robert M; Walter, Peter: Targeting proteins to membranes: structure of the signal recognition particle, 2005

Frand, Alison R; Russel, Sascha; Ruvkun, Gary: Functional Genomic Analysis of C. elegans Molting, 2005

Kuroda, H; Fuentealba, L; Ikeda, A; Reversade, B; De Robertis, E M: Default neural induction: neuralization of dissociated Xenopus cells is mediated by Ras/MAPK activation, 2005

Poderycki, Michael J; Rome, Leonard H; Harrington, Lea; Kickhoefer, Valerie A: The p80 homology region of TEP1 is sufficient for its association with the telomerase and vault RNAs, and the vault particle, 2005

Reversade, Bruno; Kuroda, Hiroki; Lee, Hojoon; Mays, Ashley; De Robertis, Edward M: Depletion of Bmp2, Bmp4, Bmp7 and Spemann organizer signals induces massive brain formation in Xenopus embryos, 2005

Ronald, James; Brem, Rachel B; Whittle, Jacqueline; Kruglyak, Leonid: Local Regulatory Variation in Saccharomyces cerevisiae, 2005

Storey, John D; Akey, Joshua M; Kruglyak, Leonid: Multiple Locus Linkage Analysis of Genomewide Expression in Yeast, 2005

Tran, Robert K; Zilberman, Daniel; de Bustos, Cecilia; Ditt, Renata F; Henikoff, Jorja G; Lindroth, Anders M et al.: Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis, 2005

Akey, Joshua M; Eberle, Michael A; Rieder, Mark J; Carlson, Christopher S; Shriver, Mark D; Nickerson, Deborah A et al.: Population History and Natural Selection Shape Patterns of Genetic Variation in 132 Genes, 2004

Chu, Feixia; Shan, Shu-ou; Moustakas, Demetri T; Alber, Frank; Egea, Pascal F; Stroud, Robert M et al.: Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry, 2004

De Robertis, Edward M.: Inactivation of mouse Twisted gastrulation reveals its role in promoting Bmp4 activity during forebrain development, 2004

Egea, Pascal F; Shan, Shu-ou; Napetschnig, Johanna; Savage, David F; Walter, Peter; Stroud, Robert M: Substrate twinning activates the signal recognition particle and its receptor, 2004

Kuroda, Hiroki; Wessely, Oliver; Robertis, EM De: Neural Induction in Xenopus: Requirement for Ectodermal and Endomesodermal Signals via Chordin, Noggin, β-Catenin, and Cerberus, 2004

Oelgeschläger, Michael; Tran, Uyen; Grubisic, Kristina; De Robertis, Edward M: Identification of a second Xenopus twisted gastrulation gene., 2004

Ogorzalek Loo, Rachel R: Top-Down, Bottom-Up, and Side-to-Side Proteomics with Virtual 2-D Gels, 2004

Ogorzalek Loo, Rachel R; Yam, L; Loo, J A; Schumaker, V N: Virtual two-dimensional gel electrophoresis of high-density lipoproteins, 2004

Plath, Kathrin; Talbot, Dale; Hamer, Karien M; Otte, Arie P; Yang, Thomas P; Jaenisch, Rudolf et al.: Developmentally regulated alterations in Polycomb repressive complex 1 proteins on the inactive X chromosome, 2004

Xie, Zhixin; Johansen, Lisa K; Gustafson, Adam M; Kasschau, Kristin D; Lellis, Andrew D; Zilberman, Daniel et al.: Genetic and Functional Diversification of Small RNA Pathways in Plants, 2004

Savage, David F; Egea, Pascal F; Robles-Colmenares, Yaneth; O'Connell, Joseph D; Stroud, Robert M: Architecture and Selectivity in Aquaporins: 2.5 Å X-Ray Structure of Aquaporin Z, 2003

Strong, Michael; Mallick, Parag; Pellegrini, Matteo; Thompson, Michael J; Eisenberg, David: Inference of protein function and protein linkages in Mycobacterium tuberculosis based on prokaryotic genome organization: a combined computational approach, 2003

Egea, Pascal F; Mitschler, André; Moras, Dino: Molecular Recognition of Agonist Ligands by RXRs, 2002

Egea, PF; Mitschler, A; Moras, D: Molecular recognition of agonist ligands by RXRs, 2002

Hyde, Maureen; Block-Alper, Laura; Felix, Jahaira; Webster, Paul; Meyer, David I: Induction of secretory pathway components in yeast is associated with increased stability of their mRNA, 2002

Egea, Pascal F; Rochel, Natacha; Birck, Catherine; Vachette, Patrice; Timmins, Peter A; Moras, Dino: Effects of ligand binding on the association properties and conformation in solution of retinoic acid receptors RXR and RAR11Edited by M. F. Moody, 2001

Egea, PF; Moras, D: Purification and crystallization of the human RXRα ligand-binding domain-9-cisRA complex, 2001

Egea, Pascal F; Moras, Dino: Purification and crystallization of the human RXRα ligand‐binding domain–9‐cisRA complex, 2001

Gonen, Tamir; Grey, Angus C; Jacobs, Marc D; Donaldson, Paul J; Kistler, Joerg: MP20, the second most abundant lens membrane protein and member of the tetraspanin superfamily, joins the list of ligands of galectin-3, 2001

Kickhoefer, Valerie A; Liu, Yie; Kong, Lawrence B; Snow, Bryan E; Stewart, Phoebe L; Harrington, Lea et al.: The Telomerase/Vault-Associated Protein Tep1 Is Required for Vault RNA Stability and Its Association with the Vault Particle, 2001

Rochel, Natachu; Tocchini‐Valentini, Guiseppe; Egea, Pascal F; Juntunen, Kari; Garnier, Jean‐Marie; Vihko, Pirkko et al.: Functional and structural characterization of the insertion region in the ligand binding domain of the vitamin D nuclear receptor, 2001

Egea, Pascal F; Mitschler, André; Rochel, Natacha; Ruff, Marc; Chambon, Pierre; Moras, Dino: Crystal structure of the human RXRα ligand‐binding domain bound to its natural ligand: 9‐cis retinoic acid, 2000

Egea, Pascal F; Klaholz, Bruno P; Moras, Dino: Ligand–protein interactions in nuclear receptors of hormones, 2000

Becker, Frank; Block-Alper, Laura; Nakamura, Gerald; Harada, Josephine; Wittrup, K Dane; Meyer, David I: Expression of the 180-kD Ribosome Receptor Induces Membrane Proliferation and Increased Secretory Activity in Yeast, 1999

Herrmann, Christine; Golkaramnay, Elaheh; Inman, Elisabeth; Rome, Leonard; Volknandt, Walter: Recombinant Major Vault Protein Is Targeted to Neuritic Tips of PC12 Cells, 1999