Open Access Policy Deposits

Thai, M; Ting, PY; McLaughlin, J; Cheng, D; Müschen, M; Witte, ON et al.: ABL fusion oncogene transformation and inhibitor sensitivity are mediated by the cellular regulator RIN1., 2011

Torabi, Noorossadat; Kruglyak, Leonid: Variants in SUP45 and TRM10 Underlie Natural Variation in Translation Termination Efficiency in Saccharomyces cerevisiae, 2011

Xiao, Botao; Zhang, Houyin; Johnson, Reid C; Marko, John F: Force-driven unbinding of proteins HU and Fis from DNA quantified using a thermodynamic Maxwell relation, 2011

Zinman, Guy; Brower-Sinning, Rachel; Emeche, Chineye H; Ernst, Jason; Huang, Grace Tzu-Wei; Mahony, Shaun et al.: Large Scale Comparison of Innate Responses to Viral and Bacterial Pathogens in Mouse and Macaque, 2011

Arellano-Garcia, Martha E; Li, Roger; Liu, Xiaojun; Xie, Yongming; Yan, Xiaofei; Loo, Joseph A et al.: Identification of Tetranectin as a Potential Biomarker for Metastatic Oral Cancer, 2010

Bruhn, Kevin W; Marathe, Chaitra; Maretti-Mira, Ana Cláudia; Nguyen, Hong; Haskell, Jacquelyn; Tran, Thu Anh et al.: LXR Deficiency Confers Increased Protection against Visceral Leishmania Infection in Mice, 2010

Deleris, Angelique; Greenberg, Maxim VC; Ausin, Israel; Law, Rona WY; Moissiard, Guillaume; Schubert, Daniel et al.: Involvement of a Jumonji‐C domain‐containing histone demethylase in DRM2‐mediated maintenance of DNA methylation, 2010

Egea, Pascal F; Stroud, Robert M: Lateral opening of a translocon upon entry of protein suggests the mechanism of insertion into membranes, 2010

Ehrenreich, Ian M; Torabi, Noorossadat; Jia, Yue; Kent, Jonathan; Martis, Stephen; Shapiro, Joshua A et al.: Dissection of genetically complex traits with extremely large pools of yeast segregants, 2010

Henderson, Ian R; Deleris, Angelique; Wong, William; Zhong, Xuehua; Chin, Hang Gyeong; Horwitz, Gregory A et al.: The De Novo Cytosine Methyltransferase DRM2 Requires Intact UBA Domains and a Catalytically Mutated Paralog DRM3 during RNA–Directed DNA Methylation in Arabidopsis thaliana, 2010

Leuchter, Andrew F; Cook, Ian A; Hamilton, Steven P; Narr, Katherine L; Toga, Arthur; Hunter, Aimee M et al.: Biomarkers to Predict Antidepressant Response, 2010

Lopez-Mosqueda, Jaime; Maas, Nancy L; Jonsson, Zophonias O; DeFazio-Eli, Lisa G; Wohlschlegel, James; Toczyski, David P: Damage-induced phosphorylation of Sld3 is important to block late origin firing, 2010

Mandal, Sudip; Freije, William A; Guptan, Preeta; Banerjee, Utpal: Metabolic control of G1–S transition: cyclin E degradation by p53-induced activation of the ubiquitin–proteasome system, 2010

Meli, Vijaykumar S; Osuna, Beatriz; Ruvkun, Gary; Frand, Alison R: MLT-10 Defines a Family of DUF644 and Proline-rich Repeat Proteins Involved in the Molting Cycle of Caenorhabditis elegans, 2010

Reichow, Steve L; Korotkov, Konstantin V; Hol, Wim GJ; Gonen, Tamir: Structure of the cholera toxin secretion channel in its closed state, 2010

Roy, Sushmita: Identification of functional elements and regulatory circuits by Drosophila modENCODE, 2010

Sander, Veronika; Eivers, Edward; Choi, Renee H; De Robertis, Edward M: Drosophila Smad2 Opposes Mad Signaling during Wing Vein Development, 2010

Tien, Jerry F; Umbreit, Neil T; Gestaut, Daniel R; Franck, Andrew D; Cooper, Jeremy; Wordeman, Linda et al.: Cooperation of the Dam1 and Ndc80 kinetochore complexes enhances microtubule coupling and is regulated by aurora B, 2010

Xiao, Botao; Johnson, Reid C; Marko, John F: Modulation of HU–DNA interactions by salt concentration and applied force, 2010

Ausin, Israel; Mockler, Todd C; Chory, Joanne; Jacobsen, Steven E: IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana, 2009

Averette, Kathleen M; Pratt, Matthew R; Yang, Yanan; Bassilian, Sara; Whitelegge, Julian P; Loo, Joseph A et al.: Anthrax Lethal Toxin Induced Lysosomal Membrane Permeabilization and Cytosolic Cathepsin Release Is Nlrp1b/Nalp1b-Dependent, 2009

Bloom, Joshua S; Khan, Zia; Kruglyak, Leonid; Singh, Mona; Caudy, Amy A: Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays, 2009

Champion, Cheryl I; Kickhoefer, Valerie A; Liu, Guangchao; Moniz, Raymond J; Freed, Amanda S; Bergmann, Liisa L et al.: A Vault Nanoparticle Vaccine Induces Protective Mucosal Immunity, 2009

Chao, Lily C; Wroblewski, Kevin; Zhang, Zidong; Pei, Liming; Vergnes, Laurent; Ilkayeva, Olga R et al.: Insulin Resistance and Altered Systemic Glucose Metabolism in Mice Lacking Nur77, 2009

Dhar, Gautam; McLean, Meghan M; Heiss, John K; Johnson, Reid C: The Hin recombinase assembles a tetrameric protein swivel that exchanges DNA strands, 2009

Eivers, Edward; Fuentealba, Luis C; Sander, Veronika; Clemens, James C; Hartnett, Lori; De Robertis, EM: Mad Is Required for Wingless Signaling in Wing Development and Segment Patterning in Drosophila, 2009

Ernst, Jason; Ghanem, Louis; Bar-Joseph, Ziv; McNamara, Michael; Brown, Jason; Steinman, Richard A: IL-3 and Oncogenic Abl Regulate the Myeloblast Transcriptome by Altering mRNA Stability, 2009

Evans, Cory J; Olson, John M; Ngo, Kathy T; Kim, Eunha; Lee, Noemi E; Kuoy, Edward et al.: G-TRACE: rapid Gal4-based cell lineage analysis in Drosophila, 2009

Fabian, Marc R; Mathonnet, Géraldine; Sundermeier, Thomas; Mathys, Hansruedi; Zipprich, Jakob T; Svitkin, Yuri V et al.: Mammalian miRNA RISC Recruits CAF1 and PABP to Affect PABP-Dependent Deadenylation, 2009

Jacob, Yannick; Feng, Suhua; LeBlanc, Chantal A; Bernatavichute, Yana V; Stroud, Hume; Cokus, Shawn et al.: ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing, 2009

Kim, Jong Kyong; Estève, Pierre-Olivier; Jacobsen, Steven E; Pradhan, Sriharsa: UHRF1 binds G9a and participates in p21 transcriptional regulation in mammalian cells, 2009

Korennykh, Alexei V; Egea, Pascal F; Korostelev, Andrei A; Finer-Moore, Janet; Zhang, Chao; Shokat, Kevan M et al.: The unfolded protein response signals through high-order assembly of Ire1, 2009

Maji, Samir K; Loo, Rachel R Ogorzalek; Inayathullah, Mohammed; Spring, Sean M; Vollers, Sabrina S; Condron, Margaret M et al.: Amino Acid Position-specific Contributions to Amyloid β-Protein Oligomerization*, 2009

Nie, Minghua; Xie, Yongming; Loo, Joseph A; Courey, Albert J: Genetic and Proteomic Evidence for Roles of Drosophila SUMO in Cell Cycle Control, Ras Signaling, and Early Pattern Formation, 2009

Owusu-Ansah, Edward; Banerjee, Utpal: Reactive oxygen species prime Drosophila haematopoietic progenitors for differentiation, 2009

Rockman, Matthew V; Kruglyak, Leonid: Recombinational Landscape and Population Genomics of Caenorhabditis elegans, 2009

Ruderfer, Douglas M; Roberts, David C; Schreiber, Stuart L; Perlstein, Ethan O; Kruglyak, Leonid: Using Expression and Genotype to Predict Drug Response in Yeast, 2009

Wang, Jiou; Farr, George W; Hall, David H; Li, Fei; Furtak, Krystyna; Dreier, Lars et al.: An ALS-Linked Mutant SOD1 Produces a Locomotor Defect Associated with Aggregation and Synaptic Dysfunction When Expressed in Neurons of Caenorhabditis elegans, 2009

Zhang, Xiaoyu; Bernatavichute, Yana V; Cokus, Shawn; Pellegrini, Matteo; Jacobsen, Steven E: Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana, 2009

Bernatavichute, Yana V; Zhang, Xiaoyu; Cokus, Shawn; Pellegrini, Matteo; Jacobsen, Steven E: Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana, 2008

Capra, Emily J; Skrovanek, Sonja M; Kruglyak, Leonid: Comparative Developmental Expression Profiling of Two C. elegans Isolates, 2008

Claypool, Steven M; Oktay, Yavuz; Boontheung, Pinmanee; Loo, Joseph A; Koehler, Carla M: Cardiolipin defines the interactome of the major ADP/ATP carrier protein of the mitochondrial inner membrane, 2008

Demogines, Ann; Smith, Erin; Kruglyak, Leonid; Alani, Eric: Identification and Dissection of a Complex DNA Repair Sensitivity Phenotype in Baker's Yeast, 2008

Egea, Pascal F; Napetschnig, Johanna; Walter, Peter; Stroud, Robert M: Structures of SRP54 and SRP19, the Two Proteins that Organize the Ribonucleic Core of the Signal Recognition Particle from Pyrococcus furiosus, 2008

Egea, Pascal F; Tsuruta, Hiro; de Leon, Gladys P; Napetschnig, Johanna; Walter, Peter; Stroud, Robert M: Structures of the Signal Recognition Particle Receptor from the Archaeon Pyrococcus furiosus: Implications for the Targeting Step at the Membrane, 2008

Ernst, Jason; Beg, Qasim K; Kay, Krin A; Balázsi, Gábor; Oltvai, Zoltán N; Bar-Joseph, Ziv: A Semi-Supervised Method for Predicting Transcription Factor–Gene Interactions in Escherichia coli, 2008

Farady, Christopher J; Egea, Pascal F; Schneider, Eric L; Darragh, Molly R; Craik, Charles S: Structure of an Fab–Protease Complex Reveals a Highly Specific Non-canonical Mechanism of Inhibition, 2008

Johnson, Lianna M; Law, Julie A; Khattar, Anuj; Henderson, Ian R; Jacobsen, Steven E: SRA-Domain Proteins Required for DRM2-Mediated De Novo DNA Methylation, 2008

Li, Carey F; Henderson, Ian R; Song, Liang; Fedoroff, Nina; Lagrange, Thierry; Jacobsen, Steven E: Dynamic Regulation of ARGONAUTE4 within Multiple Nuclear Bodies in Arabidopsis thaliana, 2008

Smith, Erin N; Kruglyak, Leonid: Gene–Environment Interaction in Yeast Gene Expression, 2008