Open Access Policy Deposits

Sah, Govind Prasad; Kovalick, Grace; Chopyk, Jessica; Kuo, Peiting; Huang, Lina; Ghatbale, Pooja et al.: Characterization of SARS-CoV-2 Distribution and Microbial Succession in a Clinical Microbiology Testing Facility during the SARS-CoV-2 Pandemic., 2023

Smart, Mary; Vaccaro, Kristen; Munyaka, Imani: Conceptualizations of Privacy in CS Syllabi, 2023

Stevenson, Garrett; Kirshner, Dan; Bennion, Brian; Yang, Yue; Zhang, Xiaohua; Zemla, Adam et al.: Clustering Protein Binding Pockets and Identifying Potential Drug Interactions: A Novel Ligand-Based Featurization Method., 2023

Tap, Julien; Lejzerowicz, Franck; Cotillard, Aurélie; Pichaud, Matthieu; McDonald, Daniel; Song, Se Jin et al.: Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors., 2023

Tapryal, Nisha; Chakraborty, Anirban; Saha, Kaushik; Islam, Azharul; Pan, Lang; Hosoki, Koa et al.: The DNA glycosylase NEIL2 is protective during SARS-CoV-2 infection, 2023

Taylor, Bryn C; Andalibi, Mohammadsobhan Sheikh; Wandro, Stephen; Weldon, Kelly C; Sepich-Poore, Gregory D; Carpenter, Carolina S et al.: Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome, 2023

Usyk, Mykhaylo; Peters, Brandilyn A; Karthikeyan, Smruthi; McDonald, Daniel; Sollecito, Christopher C; Vazquez-Baeza, Yoshiki et al.: Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies, 2023

Verbiest, Max; Maksimov, Mikhail; Jin, Ye; Anisimova, Maria; Gymrek, Melissa; Sonay, Tugce Bilgin: Mutation and selection processes regulating short tandem repeats give rise to genetic and phenotypic diversity across species, 2023

Vo, Daniella; Ghosh, Pradipta; Sahoo, Debashis: Artificial intelligence-guided discovery of gastric cancer continuum, 2023

Wang, Zixuan; Taram, Mohammadkazem; Moghimi, Daniel; Swanson, Steven; Tullsen, Dean M; Zhao, Jishen: NVLeak: Off-Chip Side-Channel Attacks via Non-Volatile Memory Systems., 2023

Weng, Olivia; Marcano, Gabriel; Loncar, Vladimir; Khodamoradi, Alireza; G, Abarajithan; Sheybani, Nojan et al.: Tailor: Altering Skip Connections for Resource-Efficient Inference, 2023

Xu, Weihong; Kang, Jaeyoung; Bittremieux, Wout; Moshiri, Niema; Rosing, Tajana: HyperSpec: Ultrafast Mass Spectra Clustering in Hyperdimensional Space, 2023

Yang, Connie; Coney, Leslie; Mohanraj, Deepthi; Casanova-Perez, Reggie; Bascom, Emily; Efrem, Niyat et al.: Imagining Improved Interactions: Patients Designs To Address Implicit Bias., 2023

Yavarzadeh, Hosein; Taram, Mohammadkazem; Narayan, Shravan; Stefan, Deian; Tullsen, Dean: Half&Half: Demystifying Intel’s Directional Branch Predictors for Fast, Secure Partitioned Execution, 2023

Yavarzadeh, Hosein; Taram, Mohammadkazem; Narayan, Shravan; Stefan, Deian; Tullsen, Dean: Half&Half: Demystifying Intel’s Directional Branch Predictors for Fast, Secure Partitioned Execution, 2023

Yavarzadeh, Hosein; Taram, Mohammadkazem; Narayan, Shravan; Stefan, Deian; Tullsen, Dean: Half&Half: Demystifying Intel's Directional Branch Predictors for Fast, Secure Partitioned Execution, 2023

Ze, Yanjie; Hansen, Nicklas; Chen, Yinbo; Jain, Mohit; Wang, Xiaolong: Visual Reinforcement Learning With Self-Supervised 3D Representations, 2023

Zhang, Hengyuan; Venkatramani, Shashank; Paz, David; Li, Qinru; Xiang, Hao; Christensen, Henrik I: Probabilistic Semantic Mapping for Autonomous Driving in Urban Environments, 2023

Zhang, Xiyuan; Chowdhury, Ranak Roy; Zhang, Jiayun; Hong, Dezhi; Gupta, Rajesh K; Shang, Jingbo: Unleashing the Power of Shared Label Structures for Human Activity Recognition, 2023

Zheng, An; Shen, Zeyang; Glass, Christopher K; Gymrek, Melissa: Deep learning predicts the impact of regulatory variants on cell-type-specific enhancers in the brain, 2023

Ziaei Jam, Helyaneh; Li, Yang; DeVito, Ross; Mousavi, Nima; Ma, Nichole; Lujumba, Ibra et al.: A deep population reference panel of tandem repeat variation, 2023

Abdel-Haq, Reem; Schlachetzki, Johannes CM; Boktor, Joseph C; Cantu-Jungles, Thaisa M; Thron, Taren; Zhang, Mengying et al.: A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice., 2022

Adams, Eddie; Sepich‐Poore, Gregory D; Miller‐Montgomery, Sandrine; Knight, Rob: Using all our genomes: Blood‐based liquid biopsies for the early detection of cancer, 2022

Ajorpaz, Samira Mirbagher; Moghimi, Daniel; Collins, Jeffrey Neal; Pokam, Gilles; Abu-Ghazaleh, Nael; Tullsen, Dean: EVAX: Towards a Practical, Pro-active & Adaptive Architecture for High Performance & Security, 2022

Aksenov, Alexander A; Salido, Rodolfo A; Melnik, Alexey V; Brennan, Caitriona; Brejnrod, Asker; Caraballo-Rodríguez, Andrés Mauricio et al.: The molecular impact of life in an indoor environment, 2022

Aleti, Gajender; Kohn, Jordan N; Troyer, Emily A; Weldon, Kelly; Huang, Shi; Tripathi, Anupriya et al.: Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides, 2022

Apodaca, Calvin; Casanova-Perez, Reggie; Bascom, Emily; Mohanraj, Deepthi; Lane, Cezanne; Vidyarthi, Drishti et al.: Maybe they had a bad day: how LGBTQ and BIPOC patients react to bias in healthcare and struggle to speak out., 2022

Armingol, Erick; Baghdassarian, Hratch M; Martino, Cameron; Perez-Lopez, Araceli; Aamodt, Caitlin; Knight, Rob et al.: Context-aware deconvolution of cell–cell communication with Tensor-cell2cell, 2022

Armstrong, George; Martino, Cameron; Morris, Justin; Khaleghi, Behnam; Kang, Jaeyoung; DeReus, Jeff et al.: Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases, 2022

Ayers, Hudson; Dutta, Prabal; Levis, Philip; Levy, Amit; Pannuto, Pat; Van Why, Johnathan et al.: Tiered trust for useful embedded systems security, 2022

Bai-Tong, Shiyu S; Thoemmes, Megan S; Weldon, Kelly C; Motazavi, Diba; Kitsen, Jessica; Hansen, Shalisa et al.: The impact of maternal asthma on the preterm infants' gut metabolome and microbiome (MAP study), 2022

Bakshi, Ainesh; Diakonikolas, Ilias; Jia, He; Kane, Daniel M; Kothari, Pravesh K; Vempala, Santosh S: Robustly learning mixtures of k arbitrary Gaussians, 2022

Bangaru, Sai Praveen; Gharbi, Michael; Luan, Fujun; Li, Tzu-Mao; Sunkavalli, Kalyan; Hasan, Milos et al.: Differentiable Rendering of Neural SDFs through Reparameterization, 2022

Barrow, Michael; Restuccia, Francesco; Gobulukoglu, Mustafa; Rossi, Enrico; Kastner, Ryan: A Remote Control System for Emergency Ventilators During SARS-CoV-2, 2022

Bergstrom, Erik; Luebeck, Jens; Petljak, Mia; Khandekar, Azhar; Barnes, Mark; Zhang, Tongwu et al.: Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA., 2022

Bowers, Samuel J; Summa, Keith C; Thompson, Robert S; González, Antonio; Vargas, Fernando; Olker, Christopher et al.: A Prebiotic Diet Alters the Fecal Microbiome and Improves Sleep in Response to Sleep Disruption in Rats, 2022

Bresnahan, Philip; Cyronak, Tyler; Brewin, Robert JW; Andersson, Andreas; Wirth, Taylor; Martz, Todd et al.: A high-tech, low-cost, Internet of Things surfboard fin for coastal citizen science, outreach, and education, 2022

Canonne, Clement L; Diakonikolas, Ilias; Kane, Daniel M; Liu, Sihan: Near-Optimal Bounds for Testing Histogram Distributions, 2022

Cantú, Victor J; Belda-Ferre, Pedro; Salido, Rodolfo A; Tsai, Rebecca; Austin, Brett; Jordan, William et al.: Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings, 2022

Cantú, Victor J; Salido, Rodolfo A; Huang, Shi; Rahman, Gibraan; Tsai, Rebecca; Valentine, Holly et al.: SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp., 2022

Cantú, Victor J; Sanders, Karenina; Belda-Ferre, Pedro; Salido, Rodolfo A; Tsai, Rebecca; Austin, Brett et al.: Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings, 2022

Chandra, Kartik; Li, Tzu-Mao; Tenenbaum, Joshua; Ragan-Kelley, Jonathan: Designing Perceptual Puzzles by Differentiating Probabilistic Programs, 2022

Cheng, Yu; Diakonikolas, Ilias; Ge, Rong; Gupta, Shivam; Kane, Daniel M; Soltanolkotabi, Mahdi: Outlier-Robust Sparse Estimation via Non-Convex Optimization, 2022

Cotillard, Aurélie; Cartier-Meheust, Agnès; Litwin, Nicole S; Chaumont, Soline; Saccareau, Mathilde; Lejzerowicz, Franck et al.: A posteriori dietary patterns better explain variations of the gut microbiome than individual markers in the American Gut Project, 2022

DAmbrosia, Christopher; Aronoff-Spencer, Eliah; Huang, Estella; Goldhaber, Nicole; Christensen, Henrik; Broderick, Ryan et al.: The neurophysiology of intraoperative error: An EEG study of trainee surgeons during robotic-assisted surgery simulations., 2022

Demmer, Ryan T; Ulrich, Angela K; Wiggen, Talia D; Strickland, Ali; Naumchik, Brianna M; Kulasingam, Shalini et al.: Severe acute respiratory coronavirus virus 2 (SARS-CoV-2) screening among symptom-free healthcare workers, 2022

Diakonikolas, Ilias; Kane, Daniel M; Kongsgaard, Daniel; Li, Jerry; Tian, Kevin: Clustering mixture models in almost-linear time via list-decodable mean estimation, 2022

Diakonikolas, Ilias; Kane, Daniel M; Manurangsi, Pasin; Ren, Lisheng: Cryptographic Hardness of Learning Halfspaces with Massart Noise, 2022

Diakonikolas, Ilias; Kane, Daniel M; Kontonis, Vasilis; Tzamos, Christos; Zarifis, Nikos: Learning general halfspaces with general Massart noise under the Gaussian distribution, 2022

Diakonikolas, Ilias; Kane, Daniel M; Karmalkar, Sushrut; Pensia, Ankit; Pittas, Thanasis: List-Decodable Sparse Mean Estimation via Difference-of-Pairs Filtering, 2022