Open Access Policy Deposits

Cantú, Victor J; Salido, Rodolfo A; Huang, Shi; Rahman, Gibraan; Tsai, Rebecca; Valentine, Holly et al.: SARS-CoV-2 Distribution in Residential Housing Suggests Contact Deposition and Correlates with Rothia sp., 2021

Casanova-Perez, Reggie; Apodaca, Calvin; Bascom, Emily; Mohanraj, Deepthi; Lane, Cezanne; Vidyarthi, Drishti et al.: Broken down by bias: Healthcare biases experienced by BIPOC and LGBTQ+ patients., 2021

Che-Castaldo, Judy; Cousin, Rémi; Daryanto, Stefani; Deng, Grace; Feng, Mei-Ling; Gupta, Rajesh et al.: Critical Risk Indicators (CRIs) for the electric power grid: a survey and discussion of interconnected effects., 2021

Chen, Chen; Mrini, Khalil; Charles, Kemeberly; Lifset, Ella; Hogarth, Michael; Moore, Alison et al.: Toward a Unified Metadata Schema for Ecological Momentary Assessment with Voice-First Virtual Assistants., 2021

Chen, Chen; Johnson, Janet; Charles, Kemeberly; Lee, Alice; Lifset, Ella; Hogarth, Michael et al.: Understanding Barriers and Design Opportunities to Improve Healthcare and QOL for Older Adults through Voice Assistants., 2021

Christensen, Henrik; Amato, Nancy; Yanco, Holly; Mataric, Maja; Choset, Howie; Drobnis, Ann et al.: A Roadmap for US Robotics – From Internet to Robotics 2020 Edition, 2021

Dang, D; Chittamuru, SVR; Pasricha, S; Mahapatra, R; Sahoo, D: BPLight-CNN: A Photonics-based Backpropagation Accelerator for Deep Learning, 2021

Dasgupta, Suryasarathi; Maricic, Igor; Tang, Jay; Wandro, Stephen; Weldon, Kelly; Carpenter, Carolina S et al.: Class Ib MHC–Mediated Immune Interactions Play a Critical Role in Maintaining Mucosal Homeostasis in the Mammalian Large Intestine, 2021

Deel, Heather; Emmons, Alexandra L; Kiely, Jennifer; Damann, Franklin E; Carter, David O; Lynne, Aaron et al.: A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition, 2021

Diakonikolas, Ilias; Kane, Daniel M; Kontonis, Vasilis; Tzamos, Christos; Zarifis, Nikos: Agnostic Proper Learning of Halfspaces under Gaussian Marginals, 2021

Diakonikolas, Ilias; Impagliazzo, Russell; Kane, Daniel M; Lei, Rex; Sorrell, Jessica; Tzamos, Christos: Boosting in the Presence of Massart Noise., 2021

Diakonikolas, I; Impagliazzo, R; Kane, D; Lei, R; Sorrell, J; Tzamos, C: Boosting in the Presence of Massart Noise, 2021

Diakonikolas, Ilias; Kane, Daniel M; Kontonis, Vasilis; Tzamos, Christos; Zarifis, Nikos: Efficiently learning halfspaces with Tsybakov noise, 2021

Diakonikolas, Ilias; Kane, Daniel M; Tzamos, Christos: Forster Decomposition and Learning Halfspaces with Noise, 2021

Diakonikolas, Ilias; Kane, Daniel M; Kongsgaard, Daniel; Li, Jerry; Tian, Kevin: List-Decodable Mean Estimation in Nearly-PCA Time, 2021

Diakonikolas, Ilias; Gouleakis, Themis; Kane, Daniel M; Peebles, John; Price, Eric: Optimal testing of discrete distributions with high probability, 2021

Diakonikolas, Ilias; Kane, Daniel M; Pittas, Thanasis; Zarifis, Nikos: The Optimality of Polynomial Regression for Agnostic Learning under Gaussian Marginals in the SQ Model, 2021

Diakonikolas, Ilias; Kane, Daniel M; Stewart, Alistair; Sun, Yuxin: Outlier-Robust Learning of Ising Models Under Dobrushin's Condition, 2021

Diakonikolas, Ilias; Kamath, Gautam; Kane, Daniel M; Li, Jerry; Moitra, Ankur; Stewart, Alistair: Robustness meets algorithms, 2021

Diakonikolas, Ilias; Kane, Daniel M: The Sample Complexity of Robust Covariance Testing, 2021

Diakonikolas, Ilias; Kane, Daniel M; Pensia, Ankit; Pittas, Thanasis; Stewart, Alistair: Statistical Query Lower Bounds for List-Decodable Linear Regression, 2021

Dillon, Matthew R; Bolyen, Evan; Adamov, Anja; Belk, Aeriel; Borsom, Emily; Burcham, Zachary et al.: Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops, 2021

Dilmore, Amanda H; McDonald, Daniel; Nguyen, Tanya T; Adams, James B; Krajmalnik-Brown, Rosa; Elijah, Emmanuel et al.: The Fecal Microbiome and Metabolome of Pitt Hopkins Syndrome, a Severe Autism Spectrum Disorder, 2021

Dokoshi, Tatsuya; Seidman, Jason S; Cavagnero, Kellen J; Li, Fengwu; Liggins, Marc C; Taylor, Bryn C et al.: Skin inflammation activates intestinal stromal fibroblasts and promotes colitis, 2021

Dvorkina, Tatiana; Bankevich, Anton; Sorokin, Alexei; Yang, Fan; Adu-Oppong, Boahemaa; Williams, Ryan et al.: ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs, 2021

Ear, Jason; El-Hafeez, Amer Ali Abd; Roy, Suchismita; Ngo, Tony; Rajapakse, Navin; Choi, Julie et al.: A long isoform of GIV/Girdin contains a PDZ-binding module that regulates localization and G-protein binding, 2021

Ellis, Ronald J; Iudicello, Jennifer E; Heaton, Robert K; Isnard, Stéphane; Lin, John; Routy, Jean-Pierre et al.: Markers of Gut Barrier Function and Microbial Translocation Associate with Lower Gut Microbial Diversity in People with HIV, 2021

Fang, Xin; Vázquez-Baeza, Yoshiki; Elijah, Emmanuel; Vargas, Fernando; Ackermann, Gail; Humphrey, Gregory et al.: Gastrointestinal Surgery for Inflammatory Bowel Disease Persistently Lowers Microbiome and Metabolome Diversity, 2021

Ferrell, Marc; Bazeley, Peter; Wang, Zeneng; Levison, Bruce S; Li, Xinmin S; Jia, Xun et al.: Fecal Microbiome Composition Does Not Predict Diet‐Induced TMAO Production in Healthy Adults, 2021

Fleming, Noah; Göös, Mika; Impagliazzo, Russell; Pitassi, Toniann; Robere, Robert; Tan, Li-Yang et al.: On the Power and Limitations of Branch and Cut, 2021

Ganguly, Souradipta; Muench, German Aleman; Shang, Linshan; Rosenthal, Sara Brin; Rahman, Gibraan; Wang, Ruoyu et al.: Nonalcoholic Steatohepatitis and HCC in a Hyperphagic Mouse Accelerated by Western Diet, 2021

Gligorijević, Vladimir; Renfrew, P Douglas; Kosciolek, Tomasz; Leman, Julia Koehler; Berenberg, Daniel; Vatanen, Tommi et al.: Structure-based protein function prediction using graph convolutional networks, 2021

Gobulukoglu, Mustafa; Drewes, Colin; Hunter, Bill; Richmond, Dustin; Kastner, Ryan: Classifying Computations on Multi-Tenant FPGAs, 2021

Guccione, Caitlin; Yadlapati, Rena; Shah, Shailja; Knight, Rob; Curtius, Kit: Challenges in Determining the Role of Microbiome Evolution in Barrett’s Esophagus and Progression to Esophageal Adenocarcinoma, 2021

Hansen, Nicklas; Wang, Xiaolong: Generalization in Reinforcement Learning by Soft Data Augmentation, 2021

Hendrickson, Ryan; Urbaniak, Camilla; Minich, Jeremiah J; Aronson, Heidi S; Martino, Cameron; Stepanauskas, Ramunas et al.: Clean room microbiome complexity impacts planetary protection bioburden, 2021

Ho, Chi-Jui; Wang, Yiqian; Zhang, Junkang; Nguyen, Truong; An, Cheolhong: A Convolutional Neural Network Pipeline For Multi-Temporal Retinal Image Registration, 2021

Hoeksema, Marten A; Shen, Zeyang; Holtman, Inge R; Zheng, An; Spann, Nathan J; Cobo, Isidoro et al.: Mechanisms underlying divergent responses of genetically distinct macrophages to IL-4, 2021

Huang, Shi; Jiang, Shuaiming; Huo, Dongxue; Allaband, Celeste; Estaki, Mehrbod; Cantu, Victor et al.: Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome, 2021

Huang, Ming‐Xiong; Huang, Charles W; Harrington, Deborah L; Robb‐Swan, Ashley; Angeles‐Quinto, Annemarie; Nichols, Sharon et al.: Resting‐state magnetoencephalography source magnitude imaging with deep‐learning neural network for classification of symptomatic combat‐related mild traumatic brain injury, 2021

Hung, King; Yost, Kathryn; Xie, Liangqi; Shi, Quanming; Helmsauer, Konstantin; Luebeck, Jens et al.: ecDNA hubs drive cooperative intermolecular oncogene expression., 2021

Iranmehr, Arya; Stobdan, Tsering; Zhou, Dan; Zhao, Huiwen; Kryazhimskiy, Sergey; Bafna, Vineet et al.: Multiple mechanisms drive genomic adaptation to extreme O2 levels in Drosophila melanogaster, 2021

Jiao, Jian-Yu; Fu, Li; Hua, Zheng-Shuang; Liu, Lan; Salam, Nimaichand; Liu, Peng-Fei et al.: Insight into the function and evolution of the Wood–Ljungdahl pathway in Actinobacteria, 2021

Jing, Gongchao; Zhang, Yufeng; Liu, Lu; Wang, Zengbin; Sun, Zheng; Knight, Rob et al.: A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity, 2021

Kane, Daniel M; Kominers, Scott Duke: Prisoners, Rooms, and Light Switches, 2021

Karthikeyan, Smruthi; Ronquillo, Nancy; Belda-Ferre, Pedro; Alvarado, Destiny; Javidi, Tara; Longhurst, Christopher A et al.: High-Throughput Wastewater SARS-CoV-2 Detection Enables Forecasting of Community Infection Dynamics in San Diego County, 2021

Karthikeyan, Smruthi; Nguyen, Andrew; McDonald, Daniel; Zong, Yijian; Ronquillo, Nancy; Ren, Junting et al.: Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus, 2021

Karthikeyan, Smruthi; Levy, Joshua I; De Hoff, Peter; Humphrey, Greg; Birmingham, Amanda; Jepsen, Kristen et al.: Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission, 2021

Keehner, Jocelyn; Horton, Lucy E; Binkin, Nancy J; Laurent, Louise C; Pride, David; Longhurst, Christopher A et al.: Resurgence of SARS-CoV-2 Infection in a Highly Vaccinated Health System Workforce, 2021

Kelly, Colleen R; Yen, Eugene F; Grinspan, Ari M; Kahn, Stacy A; Atreja, Ashish; Lewis, James D et al.: Fecal Microbiota Transplantation Is Highly Effective in Real-World Practice: Initial Results From the FMT National Registry, 2021