Open Access Policy Deposits

Khodamoradi, Alireza; Kastner, Ryan: $O(N)$O(N)-Space Spatiotemporal Filter for Reducing Noise in Neuromorphic Vision Sensors, 2021

Kim, Hyun Woo; Wang, Mingxun; Leber, Christopher A; Nothias, Louis-Félix; Reher, Raphael; Bin Kang, Kyo et al.: NPClassifier: A Deep Neural Network-Based Structural Classification Tool for Natural Products, 2021

Knop, A; Lovett, S; McGuire, S; Yuan, W: Guest Column, 2021

Koponen, Kari K; Salosensaari, Aaro; Ruuskanen, Matti O; Havulinna, Aki S; Männistö, Satu; Jousilahti, Pekka et al.: Associations of healthy food choices with gut microbiota profiles, 2021

Kosciolek, Tomasz; Victor, Teresa A; Kuplicki, Rayus; Rossi, Maret; Estaki, Mehrbod; Ackermann, Gail et al.: Individuals with substance use disorders have a distinct oral microbiome pattern, 2021

Kurilshikov, Alexander; Medina-Gomez, Carolina; Bacigalupe, Rodrigo; Radjabzadeh, Djawad; Wang, Jun; Demirkan, Ayse et al.: Large-scale association analyses identify host factors influencing human gut microbiome composition, 2021

LaPelusa, Michael; Donoviel, Dorit; Branzini, Sergio E; Carlson, Paul E; Culler, Stephanie; Cheema, Amrita K et al.: Microbiome for Mars: surveying microbiome connections to healthcare with implications for long-duration human spaceflight, virtual workshop, July 13, 2020., 2021

LaPelusa, Michael; Donoviel, Dorit; Branzini, Sergio E; Carlson, Paul E; Culler, Stephanie; Cheema, Amrita K et al.: Microbiome for Mars: surveying microbiome connections to healthcare with implications for long-duration human spaceflight, virtual workshop, July 13, 2020., 2021

Leão, Tiago; Wang, Mingxun; Moss, Nathan; da Silva, Ricardo; Sanders, Jon; Nurk, Sergey et al.: A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria., 2021

Li, Na; Hui, Hui; Bray, Bill; Gonzalez, Gwendolyn Michelle; Zeller, Mark; Anderson, Kristian G et al.: METTL3 regulates viral m6A RNA modification and host cell innate immune responses during SARS-CoV-2 infection, 2021

Lovett, Shachar; Wu, Kewen; Zhang, Jiapeng: Decision List Compression by Mild Random Restrictions, 2021

Lovett, Shachar: Sparse MDS Matrices over Small Fields: A Proof of the GM-MDS Conjecture, 2021

Marotz, Clarisse; Cavagnero, Kellen J; Song, Jin; McDonald, Daniel; Wandro, Stephen; Humphrey, Greg et al.: Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition, 2021

Marotz, Clarisse; Morton, James T; Navarro, Perris; Coker, Joanna; Belda-Ferre, Pedro; Knight, Rob et al.: Quantifying Live Microbial Load in Human Saliva Samples over Time Reveals Stable Composition and Dynamic Load, 2021

Marotz, Clarisse; Belda-Ferre, Pedro; Ali, Farhana; Das, Promi; Huang, Shi; Cantrell, Kalen et al.: SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment, 2021

Mei, Zhendong; Chen, Guo-Chong; Wang, Zheng; Usyk, Mykhaylo; Yu, Bing; Baeza, Yoshiki Vazquez et al.: Dietary factors, gut microbiota, and serum trimethylamine-N-oxide associated with cardiovascular disease in the Hispanic Community Health Study/Study of Latinos, 2021

Minich, Jeremiah J; Ali, Farhana; Marotz, Clarisse; Belda-Ferre, Pedro; Chiang, Leslie; Shaffer, Justin P et al.: Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment, 2021

Minich, Jeremiah J; Nowak, Barbara; Elizur, Abigail; Knight, Rob; Fielder, Stewart; Allen, Eric E: Impacts of the Marine Hatchery Built Environment, Water and Feed on Mucosal Microbiome Colonization Across Ontogeny in Yellowtail Kingfish, Seriola lalandi, 2021

Mireshghallah, Fatemehsadat; Taram, Mohammadkazem; Jalali, Ali; Elthakeb, Ahmed Taha Taha; Tullsen, Dean; Esmaeilzadeh, Hadi: Not All Features Are Equal: Discovering Essential Features for Preserving Prediction Privacy, 2021

Mitra, Ileena; Huang, Bonnie; Mousavi, Nima; Ma, Nichole; Lamkin, Michael; Yanicky, Richard et al.: Patterns of de novo tandem repeat mutations and their role in autism, 2021

Morgan, Sydney C; Aigner, Stefan; Anderson, Catelyn; Belda-Ferre, Pedro; De Hoff, Peter; Marotz, Clarisse A et al.: Automated, miniaturized, and scalable screening of healthcare workers, first responders, and students for SARS-CoV-2 in San Diego County, 2021

Morgan, Erin E; Watson, Caitlin Wei-Ming; Woods, Steven Paul; Gilbert, Paul E; Villalobos, Javier; Verduzco, Marizela: Misattributions of the source of health-related information in HIV disease, 2021

Morton, James T; McDonald, Daniel; Aksenov, Alexander A; Nothias, Louis Felix; Foulds, James R; Quinn, Robert A et al.: Reply to: Examining microbe-metabolite correlations by linear methods., 2021

Moshiri, Niema; Smith, Davey M; Mirarab, Siavash: HIV Care Prioritization Using Phylogenetic Branch Length., 2021

Mousavi, Nima; Margoliash, Jonathan; Pusarla, Neha; Saini, Shubham; Yanicky, Richard; Gymrek, Melissa: TRTools: a toolkit for genome-wide analysis of tandem repeats., 2021

Mu, Andre; McDonald, Daniel; Jarmusch, Alan K; Martino, Cameron; Brennan, Caitriona; Bryant, Mackenzie et al.: Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection, 2021

Narayan, Shravan; Disselkoen, Craig; Moghimi, Daniel; Cauligi, Sunjay; Johnson, Evan; Gang, Zhao et al.: Swivel: Hardening WebAssembly against Spectre, 2021

Nguyen, Tanya T; Zhang, Xinlian; Wu, Tsung-Chin; Liu, Jinyuan; Le, Collin; Tu, Xin M et al.: Association of Loneliness and Wisdom With Gut Microbial Diversity and Composition: An Exploratory Study., 2021

Nguyen, Tanya T; Kosciolek, Tomasz; Daly, Rebecca E; Vázquez-Baeza, Yoshiki; Swafford, Austin; Knight, Rob et al.: Gut microbiome in Schizophrenia: Altered functional pathways related to immune modulation and atherosclerotic risk, 2021

Nguyen, Tanya T; Hathaway, Hugh; Kosciolek, Tomasz; Knight, Rob; Jeste, Dilip V: Gut microbiome in serious mental illnesses: A systematic review and critical evaluation, 2021

Nguyen, Tanya; Kosciolek, Tomasz; Daly, Rebecca; Vázquez-Baeza, Yoshiki; Swafford, Austin; Knight, Rob et al.: Persons With Schizophrenia Exhibit Altered Gut Microbiome Functional Pathways Related to Immune Modulation and Cardiovascular Risk, 2021

Pang, John; Nguyen, Nam; Luebeck, Jens; Ball, Laurel; Finegersh, Andrey; Ren, Shuling et al.: Extrachromosomal DNA in HPV-Mediated Oropharyngeal Cancer Drives Diverse Oncogene Transcription, 2021

Pekar, Jonathan; Worobey, Michael; Moshiri, Niema; Scheffler, Konrad; Wertheim, Joel O: Timing the SARS-CoV-2 index case in Hubei province, 2021

Perry, Sean; Tiwari, Vaibhav; Balaji, Nishant; Joun, Erika; Ayers, Jacob; Tobler, Mathias et al.: Pyrenote: a Web-based, Manual Annotation Tool for Passive Acoustic Monitoring, 2021

Rajput, Akanksha; Poudel, Saugat; Tsunemoto, Hannah; Meehan, Michael; Szubin, Richard; Olson, Connor A et al.: Identifying the effect of vancomycin on health care–associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media, 2021

Ren, Xida; Moody, Logan; Taram, Mohammadkazem; Jordan, Matthew; Tullsen, Dean M; Venkat, Ashish: I See Dead µops: Leaking Secrets via Intel/AMD Micro-Op Caches, 2021

Restuccia, Francesco; Meza, Andres; Kastner, Ryan: Aker: A Design and Verification Framework for Safe and Secure SoC Access Control, 2021

Ruuskanen, Matti O; Åberg, Fredrik; Männistö, Ville; Havulinna, Aki S; Méric, Guillaume; Liu, Yang et al.: Links between gut microbiome composition and fatty liver disease in a large population sample, 2021

Sabey, Kate A; Song, Se Jin; Jolles, Anna; Knight, Rob; Ezenwa, Vanessa O: Coinfection and infection duration shape how pathogens affect the African buffalo gut microbiota, 2021

Sahoo, Debashis; Katkar, Gajanan D; Khandelwal, Soni; Behroozikhah,; Claire, Amanraj; Castillo, Vanessa et al.: AI-guided discovery of the invariant host response to viral pandemics, 2021

Sahoo, Debashis; Katkar, Gajanan D; Khandelwal, Soni; Behroozikhah, Mahdi; Claire, Amanraj; Castillo, Vanessa et al.: AI-guided discovery of the invariant host response to viral pandemics, 2021

Sahoo, Debashis; Swanson, Lee; Sayed, Ibrahim M; Katkar, Gajanan D; Ibeawuchi, Stella-Rita; Mittal, Yash et al.: Artificial intelligence guided discovery of a barrier-protective therapy in inflammatory bowel disease, 2021

Salido, Rodolfo A; Cantú, Victor J; Clark, Alex E; Leibel, Sandra L; Foroughishafiei, Anahid; Saha, Anushka et al.: Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs, 2021

Salido, Rodolfo A; Cantú, Victor J; Clark, Alex E; Leibel, Sandra L; Foroughishafiei, Anahid; Saha, Anushka et al.: Comparison of heat-inactivated and infectious SARS-CoV-2 across indoor surface materials shows comparable RT-qPCR viral signal intensity and persistence, 2021

Salosensaari, Aaro; Laitinen, Ville; Havulinna, Aki S; Meric, Guillaume; Cheng, Susan; Perola, Markus et al.: Taxonomic signatures of cause-specific mortality risk in human gut microbiome, 2021

Sarmashghi, Shahab; Balaban, Metin; Rachtman, Eleonora; Touri, Behrouz; Mirarab, Siavash; Bafna, Vineet: Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT., 2021

Sepich-Poore, Gregory D; Zitvogel, Laurence; Straussman, Ravid; Hasty, Jeff; Wargo, Jennifer A; Knight, Rob: The microbiome and human cancer, 2021

Shaffer, Justin P; Marotz, Clarisse; Belda-Ferre, Pedro; Martino, Cameron; Wandro, Stephen; Estaki, Mehrbod et al.: A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities, 2021

Sharma, Aditi; Lee, Jasper; Fonseca, Ayden G; Moshensky, Alex; Kothari, Taha; Sayed, Ibrahim M et al.: E-cigarettes compromise the gut barrier and trigger inflammation, 2021

Sharpton, SR; Schnabl, B; Knight, R; Loomba, R: Current Concepts, Opportunities, and Challenges of Gut Microbiome-Based Personalized Medicine in Nonalcoholic Fatty Liver Disease, 2021