Open Access Policy Deposits

Fouladi, Farnaz; Bailey, Maximilian J; Patterson, William B; Sioda, Michael; Blakley, Ivory C; Fodor, Anthony A et al.: Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing, 2020

Gauglitz, Julia M; Morton, James T; Tripathi, Anupriya; Hansen, Shalisa; Gaffney, Michele; Carpenter, Carolina et al.: Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs, 2020

Ha, Connie WY; Martin, Anthony; Sepich-Poore, Gregory D; Shi, Baochen; Wang, Yizhou; Gouin, Kenneth et al.: Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans., 2020

Hansen, Nicklas; Jangir, Rishabh; Sun, Yu; Alenyà, Guillem; Abbeel, Pieter; Efros, Alexei A et al.: Self-Supervised Policy Adaptation during Deployment, 2020

Hillmann, Benjamin; Al-Ghalith, Gabriel A; Shields-Cutler, Robin R; Zhu, Qiyun; Knight, Rob; Knights, Dan: SHOGUN: a modular, accurate and scalable framework for microbiome quantification, 2020

Hoenigl, Martin; Little, Susan J; Grelotti, David; Skaathun, Britt; Wagner, Gabriel A; Weibel, Nadir et al.: Grindr Users Take More Risks, but Are More Open to Human Immunodeficiency Virus (HIV) Pre-exposure Prophylaxis: Could This Dating App Provide a Platform for HIV Prevention Outreach?, 2020

Hopkins, Max; Kane, Daniel; Lovett, Shachar; Mahajan, Gaurav: Point Location and Active Learning: Learning Halfspaces Almost Optimally, 2020

Huang, Shi; Haiminen, Niina; Carrieri, Anna-Paola; Hu, Rebecca; Jiang, Lingjing; Parida, Laxmi et al.: Human Skin, Oral, and Gut Microbiomes Predict Chronological Age, 2020

Huang, Ming-Xiong; Huang, Charles W; Harrington, Deborah L; Nichols, Sharon; Robb-Swan, Ashley; Angeles-Quinto, Annemarie et al.: Marked Increases in Resting-State MEG Gamma-Band Activity in Combat-Related Mild Traumatic Brain Injury, 2020

Huey, Samantha L; Jiang, Lingjing; Fedarko, Marcus W; McDonald, Daniel; Martino, Cameron; Ali, Farhana et al.: Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India., 2020

Jarmusch, Alan K; Vrbanac, Alison; Momper, Jeremiah D; D., Joseph; Alhaja, Maher; Liyanage, Marlon et al.: Enhanced Characterization of Drug Metabolism and the Influence of the Intestinal Microbiome: A Pharmacokinetic, Microbiome, and Untargeted Metabolomics Study, 2020

Jarmusch, Alan K; Wang, Mingxun; Aceves, Christine M; Advani, Rohit S; Aguirre, Shaden; Aksenov, Alexander A et al.: ReDU: a framework to find and reanalyze public mass spectrometry data, 2020

Kaplan, Robert C; Wang, Zheng; Usyk, Mykhaylo; Sotres-Alvarez, Daniela; Daviglus, Martha L; Schneiderman, Neil et al.: Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity, 2020

Kim, Hoon; Nguyen, Nam-Phuong; Turner, Kristen; Wu, Sihan; Gujar, Amit D; Luebeck, Jens et al.: Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers, 2020

Kim, Miran; Song, Yongsoo; Li, Baiyu; Micciancio, Daniele: Semi-Parallel logistic regression for GWAS on encrypted data., 2020

Koga, Tomoyuki; Chaim, Isaac A; Benitez, Jorge A; Markmiller, Sebastian; Parisian, Alison D; Hevner, Robert F et al.: Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells, 2020

Kolmogorov, Mikhail; Bickhart, Derek; Behsaz, Bahar; Gurevich, Alexey; Rayko, Mikhail; Shin, Sung et al.: metaFlye: scalable long-read metagenome assembly using repeat graphs., 2020

Labarta-Bajo, Lara; Gramalla-Schmitz, Anna; Gerner, Romana R; Kazane, Katelynn R; Humphrey, Gregory; Schwartz, Tara et al.: CD8 T cells drive anorexia, dysbiosis, and blooms of a commensal with immunosuppressive potential after viral infection, 2020

Labarta-Bajo, Lara; Nilsen, Steven P; Humphrey, Gregory; Schwartz, Tara; Sanders, Karenina; Swafford, Austin et al.: Type I IFNs and CD8 T cells increase intestinal barrier permeability after chronic viral infection, 2020

Lavrinienko, Anton; Tukalenko, Eugene; Mousseau, Timothy A; Thompson, Luke R; Knight, Rob; Mappes, Tapio et al.: Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota, 2020

Li, Yueying; Yu, Hao-Bing; Zhang, Yi; Leao, Tiago; Glukhov, Evgenia; Pierce, Marsha L et al.: Pagoamide A, a Cyclic Depsipeptide Isolated from a Cultured Marine Chlorophyte, Derbesia sp., Using MS/MS-Based Molecular Networking, 2020

Limso, Clariss; Ngo, Jordan Matthew; Nguyen, Peter; Leal, Stephanie; Husain, Aida; Sahoo, Debashis et al.: The Gα‐interacting vesicle‐associated protein interacts with and promotes cell surface localization of GRP78 during endoplasmic reticulum stress, 2020

Lin, Wei; Zhang, Wensi; Paterson, Greig A; Zhu, Qiyun; Zhao, Xiang; Knight, Rob et al.: Expanding magnetic organelle biogenesis in the domain Bacteria, 2020

Loftfield, Erikka; Herzig, Karl-Heinz; Caporaso, J Gregory; Derkach, Andriy; Wan, Yunhu; Byrd, Doratha A et al.: Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort., 2020

Lovett, Shachar; Wu, Kewen; Zhang, Jiapeng: Decision list compression by mild random restrictions, 2020

Lovett, Shachar; Rao, Sankeerth; Vardy, Alexander: Probabilistic existence of large sets of designs, 2020

Lowenthal, Brett M; Sahoo, Debashis; Amin, Mahul B; Hansel, Donna E: Urothelial Proliferation of Unknown Malignant Potential Involving the Bladder: Histopathologic Features and Risk of Progression in De Novo Cases and Cases With Prior Neoplasia, 2020

Ma, Bin; Wang, Yiling; Ye, Shudi; Liu, Shan; Stirling, Erinne; Gilbert, Jack A et al.: Earth microbial co-occurrence network reveals interconnection pattern across microbiomes, 2020

Martin, Cresent B; Wambogo, Edwina A; Ahluwalia, Namanjeet; Ogden, Cynthia L: Nonalcoholic Beverage Consumption Among Adults: United States, 2015-2018., 2020

Martiny, Jennifer BH; Whiteson, Katrine L; Bohannan, Brendan JM; David, Lawrence A; Hynson, Nicole A; McFall-Ngai, Margaret et al.: The emergence of microbiome centres, 2020

McCall, Laura-Isobel; Callewaert, Chris; Zhu, Qiyun; Song, Se Jin; Bouslimani, Amina; Minich, Jeremiah J et al.: Home chemical and microbial transitions across urbanization., 2020

Mills, Robert H; Wozniak, Jacob M; Vrbanac, Alison; Campeau, Anaamika; Chassaing, Benoit; Gewirtz, Andrew et al.: Organ-level protein networks as a reference for the host effects of the microbiome, 2020

Minich, Jeremiah J; Poore, Greg D; Jantawongsri, Khattapan; Johnston, Colin; Bowie, Kate; Bowman, John et al.: Microbial Ecology of Atlantic Salmon (Salmo salar) Hatcheries: Impacts of the Built Environment on Fish Mucosal Microbiota., 2020

Minich, Jeremiah J; Power, Cecilia; Melanson, Michaela; Knight, Rob; Webber, Claire; Rough, Kirsten et al.: The Southern Bluefin Tuna Mucosal Microbiome Is Influenced by Husbandry Method, Net Pen Location, and Anti-parasite Treatment, 2020

Minich, Jeremiah J; Petrus, Semar; Michael, Julius D; Michael, Todd P; Knight, Rob; Allen, Eric E: Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus., 2020

Mireshghallah, Fatemehsadat; Taram, Mohammadkazem; Ramrakhyani, Prakash; Jalali, Ali; Tullsen, Dean; Esmaeilzadeh, Hadi: Shredder, 2020

Mireshghallah, Fatemehsadat; Taram, Mohammadkazem; Ramrakhyani, Prakash; Jalali, Ali; Tullsen, Dean; Esmaeilzadeh, Hadi: Shredder: Learning Noise Distributions to Protect Inference Privacy, 2020

Mohan, Ganesh Babu Malli; Parker, Ceth W; Urbaniak, Camilla; Singh, Nitin K; Hood, Anthony; Minich, Jeremiah J et al.: Microbiome and Metagenome Analyses of a Closed Habitat during Human Occupation, 2020

Morrissette, Madeleine; Pitt, Norman; González, Antonio; Strandwitz, Philip; Caboni, Mariaelena; Rebman, Alison W et al.: A Distinct Microbiome Signature in Posttreatment Lyme Disease Patients, 2020

Moshiri, N: TreeSwift: A massively scalable Python tree package, 2020

Mu, Andre; Carter, Glen P; Li, Lucy; Isles, Nicole S; Vrbanac, Alison F; Morton, James T et al.: Microbe-Metabolite Associations Linked to the Rebounding Murine Gut Microbiome Postcolonization with Vancomycin-Resistant Enterococcus faecium, 2020

Oh, Tae Gyu; Kim, Susy M; Caussy, Cyrielle; Fu, Ting; Guo, Jian; Bassirian, Shirin et al.: A Universal Gut-Microbiome-Derived Signature Predicts Cirrhosis, 2020

Ordiz, M Isabel; Janssen, Stefan; Humphrey, Greg; Ackermann, Gail; Stephenson, Kevin; Agapova, Sophia et al.: The effect of legume supplementation on the gut microbiota in rural Malawian infants aged 6 to 12 months, 2020

Palmu, Joonatan; Salosensaari, Aaro; Havulinna, Aki S; Cheng, Susan; Inouye, Michael; Jain, Mohit et al.: Association Between the Gut Microbiota and Blood Pressure in a Population Cohort of 6953 Individuals, 2020

Polikarpova, Nadia; Stefan, Deian; Yang, Jean; Itzhaky, Shachar; Hance, Travis; Solar-Lezama, Armando: Liquid information flow control, 2020

Poore, Gregory D; Kopylova, Evguenia; Zhu, Qiyun; Carpenter, Carolina; Fraraccio, Serena; Wandro, Stephen et al.: RETRACTED ARTICLE: Microbiome analyses of blood and tissues suggest cancer diagnostic approach, 2020

Proctor, Diana M; Shelef, Katie M; Gonzalez, Antonio; Davis, Clara L; Dethlefsen, Les; Burns, Adam R et al.: Microbial biogeography and ecology of the mouth and implications for periodontal diseases., 2020

Qin, Nan; Liang, Peng; Wu, Chunyan; Wang, Guanqun; Xu, Qian; Xiong, Xiao et al.: Longitudinal survey of microbiome associated with particulate matter in a megacity, 2020

Quinn, Robert A; Melnik, Alexey V; Vrbanac, Alison; Fu, Ting; Patras, Kathryn A; Christy, Mitchell P et al.: Global chemical effects of the microbiome include new bile-acid conjugations, 2020

Raghuvanshi, Ruma; Vasco, Karla; Vázquez-Baeza, Yoshiki; Jiang, Lingjing; Morton, James T; Li, Danxun et al.: High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy., 2020