Open Access Policy Deposits

Reher, Raphael; Kim, Hyun Woo; Zhang, Chen; Mao, Huanru Henry; Wang, Mingxun; Nothias, Louis-Félix et al.: A Convolutional Neural Network-Based Approach for the Rapid Annotation of Molecularly Diverse Natural Products, 2020

Rohena, Cristina; Kalogriopoulos, Nicholas; Rajapakse, Navin; Roy, Suchismita; Lopez-Sanchez, Inmaculada; Ablack, Jailal et al.: GIV•Kindlin Interaction Is Required for Kindlin-Mediated Integrin Recognition and Activation, 2020

Sahoo, Debashis; Zaramela, Livia S; Hernandez, Gilberto E; Mai, Uyen; Taheri, Sahar; Dang, Dharanidhar et al.: Transcriptional profiling of lung macrophages identifies a predictive signature for inflammatory lung disease in preterm infants, 2020

Salido, Rodolfo A; Morgan, Sydney C; Rojas, Maria I; Magallanes, Celestine G; Marotz, Clarisse; DeHoff, Peter et al.: Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients, 2020

Sampson, Timothy R; Challis, Collin; Jain, Neha; Moiseyenko, Anastasiya; Ladinsky, Mark S; Shastri, Gauri G et al.: A gut bacterial amyloid promotes α-synuclein aggregation and motor impairment in mice, 2020

Sayed, Ibrahim M; Chakraborty, Anirban; El-Hafeez, Amer Ali Abd; Sharma, Aditi; Sahan, Ayse Z; Huang, Wendy Jia Men et al.: The DNA Glycosylase NEIL2 Suppresses Fusobacterium-Infection-Induced Inflammation and DNA Damage in Colonic Epithelial Cells, 2020

Sengupta, Dhiman; Boothroyd, Arthur; Zubatiy, Tamara; Yalcin, Cagri; Hong, Dezhi; Hamilton, Sean et al.: Open Speech Platform: Democratizing Hearing Aid Research., 2020

Sharma, Aditi; Lee, Jasper; Fonseca, Ayden G; Moshensky, Alex; Kothari, Taha; Sayed, Ibrahim M et al.: E-cigarettes compromise the gut barrier and trigger gut inflammation, 2020

Shigeyasu, Kunitoshi; Toden, Shusuke; Ozawa, Tsuyoshi; Matsuyama, Takatoshi; Nagasaka, Takeshi; Ishikawa, Toshiaki et al.: The PVT1 lncRNA is a novel epigenetic enhancer of MYC, and a promising risk-stratification biomarker in colorectal cancer, 2020

Sirunyan, AM; Tumasyan, A; Adam, W; Ambrogi, F; Bergauer, T; Dragicevic, M et al.: Measurement of CKM matrix elements in single top quark t-channel production in proton-proton collisions at s = 13  TeV, 2020

Sirunyan, AM; Tumasyan, A; Adam, W; Ambrogi, F; Bergauer, T; Dragicevic, M et al.: Measurement of the Y(1S) pair production cross section and search for resonances decaying to Y(1S)μ+μ− in proton-proton collisions at s = 13 TeV, 2020

Sirunyan, AM; Tumasyan, A; Adam, W; Ambrogi, F; Asilar, E; Bergauer, T et al.: Measurement of tt¯ normalised multi-differential cross sections in pp collisions at s=13TeV, and simultaneous determination of the strong coupling strength, top quark pole mass, and parton distribution functions, 2020

Sirunyan, AM; Tumasyan, A; Adam, W; Ambrogi, F; Bergauer, T; Dragicevic, M et al.: Measurements of production cross sections of WZ and same-sign WW boson pairs in association with two jets in proton-proton collisions at s = 13 TeV, 2020

Sirunyan, AM; Tumasyan, A; Adam, W; Ambrogi, F; Bergauer, T; Brandstetter, J et al.: Mixed higher-order anisotropic flow and nonlinear response coefficients of charged particles in PbPb collisions at sNN=2.76 and 5.02 TeV., 2020

Sirunyan, AM; Tumasyan, A; Adam, W; Ambrogi, F; Bergauer, T; Dragicevic, M et al.: Search for physics beyond the standard model in events with jets and two same-sign or at least three charged leptons in proton-proton collisions at s=13TeV, 2020

Sirunyan, AM; Tumasyan, A; Adam, W; Ambrogi, F; Bergauer, T; Dragicevic, M et al.: Search for supersymmetry in proton-proton collisions at s = 13 TeV in events with high-momentum Z bosons and missing transverse momentum, 2020

Song, Miranda; Moshiri, Niema: An Analysis of SARS-CoV-2 Using ViReport, 2020

Song, Se Jin; Sanders, Jon G; Delsuc, Frédéric; Metcalf, Jessica; Amato, Katherine; Taylor, Michael W et al.: Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats., 2020

Su, Xiaoquan; Jing, Gongchao; Sun, Zheng; Liu, Lu; Xu, Zhenjiang; McDonald, Daniel et al.: Multiple-Disease Detection and Classification across Cohorts via Microbiome Search, 2020

Tal, Michal Caspi; Dulgeroff, Laughing Bear Torrez; Myers, Lara; Cham, Lamin B; Mayer-Barber, Katrin D; Bohrer, Andrea C et al.: Upregulation of CD47 Is a Host Checkpoint Response to Pathogen Recognition, 2020

Taram, Mohammadkazem; Venkat, Ashish; Tullsen, Dean M: Packet Chasing: Spying on Network Packets over a Cache Side-Channel., 2020

Taylor, Bryn C; Lejzerowicz, Franck; Poirel, Marion; Shaffer, Justin P; Jiang, Lingjing; Aksenov, Alexander et al.: Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome, 2020

Taylor, Bryn C; Weldon, Kelly C; Ellis, Ronald J; Franklin, Donald; Groth, Tobin; Gentry, Emily C et al.: Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome, 2020

Taylor, Bryn C; Weldon, Kelly C; Ellis, Ronald J; Franklin, Donald; McDonald, Daniel; Humphrey, Gregory et al.: Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV, 2020

The iMSMS Consortium,: Household paired design reduces variance and increases power in multi-city gut microbiome study in multiple sclerosis., 2020

Thomas, RL; Jiang, L; Adams, JS; Xu, ZZ; Shen, J; Janssen, S et al.: Vitamin D metabolites and the gut microbiome in older men, 2020

Todoric, Jelena; Di Caro, Giuseppe; Reibe, Saskia; Henstridge, Darren C; Green, Courtney R; Vrbanac, Alison et al.: Fructose stimulated de novo lipogenesis is promoted by inflammation, 2020

Velazquez, Anjelina; Bustria, Mhealyssah; Ouyang, Youwen; Moshiri, Niema: An analysis of clinical and geographical metadata of over 75,000 records in the GISAID COVID-19 database, 2020

Videvall, Elin; Song, Se Jin; Bensch, Hanna M; Strandh, Maria; Engelbrecht, Anel; Serfontein, Naomi et al.: Early-life gut dysbiosis linked to juvenile mortality in ostriches, 2020

Vrbanac, Alison; Patras, Kathryn A; Jarmusch, Alan K; Mills, Robert H; Shing, Samuel R; Quinn, Robert A et al.: Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic, 2020

Vujkovic-Cvijin, Ivan; Sklar, Jack; Jiang, Lingjing; Natarajan, Loki; Knight, Rob; Belkaid, Yasmine: Host variables confound gut microbiota studies of human disease., 2020

Wang, Zheng; Usyk, Mykhaylo; Sollecito, Christopher C; Qiu, Yunping; Williams-Nguyen, Jessica; Hua, Simin et al.: Altered Gut Microbiota and Host Metabolite Profiles in Women With Human Immunodeficiency Virus, 2020

Wozniak, Jacob M; Mills, Robert H; Olson, Joshua; Caldera, JR; Sepich-Poore, Gregory D; Carrillo-Terrazas, Marvic et al.: Mortality Risk Profiling of Staphylococcus aureus Bacteremia by Multi-omic Serum Analysis Reveals Early Predictive and Pathogenic Signatures, 2020

Yoshino, Mihoko; Kayser, Brandon D; Yoshino, Jun; Stein, Richard I; Reeds, Dominic; Eagon, J Christopher et al.: Effects of Diet versus Gastric Bypass on Metabolic Function in Diabetes, 2020

Yueh, Mei-Fei; He, Feng; Chen, Chen; Vu, Catherine; Tripathi, Anupriya; Knight, Rob et al.: Triclosan leads to dysregulation of the metabolic regulator FGF21 exacerbating high fat diet-induced nonalcoholic fatty liver disease, 2020

Zaramela, Livia; Hernandez, Gilberto; Mai, Uyen; Taheri, Sahar; Dang, Dharanidhar; Stouch, Ashley et al.: Transcriptional profiling of lung macrophages identifies a predictive signature for inflammatory lung disease in preterm infants., 2020

Zhang, Chen; Idelbayev, Yerlan; Roberts, Nicholas; Tao, Yiwen; Nannapaneni, Yashwanth; Duggan, Brendan M et al.: Author Correction: Small Molecule Accurate Recognition Technology (SMART) to Enhance Natural Products Research, 2020

Zhang, Lu; Mu, Dejun; Hu, Wei; Tai, Yu; Blackstone, Jeremy; Kastner, Ryan: Memory-Based High-Level Synthesis Optimizations Security Exploration on the Power Side-Channel, 2020

Zhou, Minxuan; Prodromou, Andreas; Wang, Rui; Yang, Hailong; Qian, Depei; Tullsen, Dean M: Temperature-Aware DRAM Cache Management - Relaxing Thermal Constraints in 3-D Systems., 2020

Zhou, Minxuan; Prodromou, Andreas; Wang, Rui; Yang, Hailong; Qian, Depei; Tullsen, Dean: Temperature-Aware DRAM Cache Management—Relaxing Thermal Constraints in 3-D Systems, 2020

Alafate, Julaiti; Freund, Yoav: Faster Boosting with Smaller Memory, 2019

Alm, Eric; Borenstein, Elhanan; Britton, Robert A; Bultman, Scott J; Chang, Eugene B; Cho, Mildred et al.: 2017 NIH-wide workshop report on “The Human Microbiome: Emerging Themes at the Horizon of the 21st Century”, 2019

Amann, Rudolf I; Baichoo, Shakuntala; Blencowe, Benjamin J; Bork, Peer; Borodovsky, Mark; Brooksbank, Cath et al.: Toward unrestricted use of public genomic data, 2019

Amato, Katherine R; Mallott, Elizabeth K; McDonald, Daniel; Dominy, Nathaniel J; Goldberg, Tony; Lambert, Joanna E et al.: Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny, 2019

Amato, Katherine R; G Sanders, Jon; Song, Se Jin; Nute, Michael; Metcalf, Jessica L; Thompson, Luke R et al.: Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes., 2019

Anikeeva, Polina; Boyden, Edward; Brangwynne, Clifford; Cissé, Ibrahim I; Fiehn, Oliver; Fromme, Petra et al.: Voices in methods development., 2019

Arora, Manish; Skach, Matt; Huang, Wei; An, Xudong; Mars, Jason; Tang, Lingjia et al.: Understanding the Impact of Socket Density in Density Optimized Servers, 2019

Bachan, J; Baden, S; Hofmeyr, S; Jacquelin, M; Kamil, A; Bonachea, D et al.: UPC++: A High-Performance Communication Framework for Asynchronous Computation, 2019

Bachan, J; Baden, S; Bonachea, Dan; Hargrove, P; Hofmeyr, S; Jacquelin, M et al.: UPC++ Programmer’s Guide, v1.0-2019.3.0, 2019

Bachan, J; Baden, S; Bonachea, Dan; Hargrove, P; Hofmeyr, S; Jacquelin, M et al.: UPC++ Specification v1.0, Draft 10, 2019